DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ranbp21 and CRM1

DIOPT Version :9

Sequence 1:NP_001285453.1 Gene:Ranbp21 / 32970 FlyBaseID:FBgn0031051 Length:1241 Species:Drosophila melanogaster
Sequence 2:NP_011734.3 Gene:CRM1 / 853133 SGDID:S000003450 Length:1084 Species:Saccharomyces cerevisiae


Alignment Length:1076 Identity:203/1076 - (18%)
Similarity:397/1076 - (36%) Gaps:300/1076 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 IDLVMNPMTQ----QQARLEAYMACERFKEESPMCAQVGLFLASSPQSNQQVRHFGLQLIEYTIK 78
            :|.|::...|    ||.:.:..:.  :|::......:....|..|  :|.|.:...|.:::..|.
Yeast    16 LDQVVSTFYQGSGVQQKQAQEILT--KFQDNPDAWQKADQILQFS--TNPQSKFIALSILDKLIT 76

  Fly    79 YRWNCITHEEKVYIKDNAIKMLNVGVGPAEDRSLLPT-KDALSR---IIVEMIKREWPQQWSDLL 139
            .:|..:.::.::.|::..:.|:   :...:|..:..| |:.:::   .:|:::|:||||.|.:.:
Yeast    77 RKWKLLPNDHRIGIRNFVVGMI---ISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFI 138

  Fly   140 PEL--SQACTKGEAQTELVLLVFLRLVEDVALLQTIESNQRRKDMYQALNNNMNDIFEFFLRLVE 202
            |||  |.:.:....:..:::   |:|:.:.....:.|...:.|.::  |.|:|:..||...:|..
Yeast   139 PELIGSSSSSVNVCENNMIV---LKLLSEEVFDFSAEQMTQAKALH--LKNSMSKEFEQIFKLCF 198

  Fly   203 QHVTAFRETTRLCNYTKANAHSRVVEMVLLTLSGFVEWVSIQHIMSSNGKLMHFLCILLNDKAF- 266
            |             ..:..:.|.::...|.:|..::.|:..::|..:|      :..||:.|.. 
Yeast   199 Q-------------VLEQGSSSSLIVATLESLLRYLHWIPYRYIYETN------ILELLSTKFMT 244

  Fly   267 ----QCNAAECLAQITNRKGQTKERKPLLQ----LFNEEPLRYIYQASQIP--ADTSSTLAVE-- 319
                :....:||.:::|.|  ..:...|::    ||.:..|:.| ..|.:|  ||..:|.|..  
Yeast   245 SPDTRAITLKCLTEVSNLK--IPQDNDLIKRQTVLFFQNTLQQI-ATSVMPVTADLKATYANANG 306

  Fly   320 QHLNFLKKLLQVLNGMAQQLVALWGKDDATQRPVHLEVLLECLLLLVQHPSLGLSHGSALIWQLL 384
            ...:||:.|...|.....:..||...|::.:     |:||.....|:|                |
Yeast   307 NDQSFLQDLAMFLTTYLARNRALLESDESLR-----ELLLNAHQYLIQ----------------L 350

  Fly   385 LKHEPSSKDFAMVNYIPKLIHTIAPRIVKLPYPASASSP---ASLSTEAYIRLEHDSEEEYALYF 446
            .|.|........::|...|:..:...:.:|  ||:..||   .|:.::|..........||...|
Yeast   351 SKIEERELFKTTLDYWHNLVADLFYEVQRL--PATEMSPLIQLSVGSQAISTGSGALNPEYMKRF 413

  Fly   447 FRCRTDFLEIFRLATLVQPLVTYGYCEQWLQQRLRNAQIEADAEVKSGNVSCSVLDPVYLEWDAL 511
                              ||..:.|.|                       .||.|        .|
Yeast   414 ------------------PLKKHIYEE-----------------------ICSQL--------RL 429

  Fly   512 VSVLDGVLSRILLVAERPSVPAGLRLLEECLKLETI-------NPLTYSILLSCISALFVFLSMS 569
            |.:.:.|....:||.|...   |..:.|...:.:||       ..|.|...|:.|....:.:|..
Yeast   430 VIIENMVRPEEVLVVENDE---GEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKL 491

  Fly   570 ACQITA---------TNCVAMSGVS-LLPRVLDKIFRALVMKPPNELEKVQAKSAKNLRRHAASL 624
            |.||..         |...|:..:| .:....:|.|...|:|  :.|:....|..|:.:...||.
Yeast   492 ARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK--DLLDLTVKKRGKDNKAVVASD 554

  Fly   625 LVKLAHKYP-----------LLLLPVFEQINGHVE--------------------LLLKEPGKHQ 658
            ::.:..:||           .::|.:||.::...|                    .::::|.:.:
Yeast   555 IMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 619

  Fly   659 LCRLMRTTLQEALILISNHFCDFERQTLFIEH-----IVQDKRTEWLAFGDALKSPLDFMSFVGL 718
              ..::|.:::    |.....|.:.|.:...:     |:.::|:  :|..:.|.|  |.|..   
Yeast   620 --PFIQTIIRD----IQKTTADLQPQQVHTFYKACGIIISEERS--VAERNRLLS--DLMQL--- 671

  Fly   719 DKPPIFAVEGAV--TLQNRSRLLDA--LHVVLGVVKRCTWPDDPERAQRGGFVIGCTELGNPICR 779
               |..|.:..|  :..|.:.|||:  :.::..::|.              .|..||.:|     
Yeast   672 ---PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKT--------------NVAVCTSMG----- 714

  Fly   780 NPATKHIVPLLSHV----LSLMRVLNELFAPEALQALSEG--------YRGIHGMMEHEKKLLMG 832
                ....|.|.|:    |.|.|.::.:.   :.|..:||        .||:..:.:...||:..
Yeast   715 ----ADFYPQLGHIYYNMLQLYRAVSSMI---SAQVAAEGLIATKTPKVRGLRTIKKEILKLVET 772

  Fly   833 ICALPTDPLDTTIR--SEPTAFEKMQTFMMMVTEG----CYHLMGSAGPSLGRDLYQLMGLSDAI 891
            ..:...: ||..::  .||.....::.:|..|.:.    ..:.|.:....:|..:.|.:.|   |
Yeast   773 YISKARN-LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVIL---I 833

  Fly   892 VTNVFS-RMDLV-------PDYR------LRPIIRVFFKPFVYSCPPS----FYDSVLVPLFAHL 938
            :.:||. .:|::       |::|      |:.|....|..|: ..||:    |.|::        
Yeast   834 LQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL-ELPPAAFKLFVDAI-------- 889

  Fly   939 APLMCERLTRRWIYIASLYESGQLDGEVNDTQEVLE 974
                |      |     .::....|.|||..|..|:
Yeast   890 ----C------W-----AFKHNNRDVEVNGLQIALD 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ranbp21NP_001285453.1 IBN_N 34..101 CDD:281761 10/66 (15%)
Xpo1 116..274 CDD:285575 32/167 (19%)
CRM1NP_011734.3 CRM1 1..1070 CDD:227432 203/1076 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.