DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ranbp21 and xpo1

DIOPT Version :9

Sequence 1:NP_001285453.1 Gene:Ranbp21 / 32970 FlyBaseID:FBgn0031051 Length:1241 Species:Drosophila melanogaster
Sequence 2:XP_002939551.2 Gene:xpo1 / 100380168 XenbaseID:XB-GENE-993240 Length:1071 Species:Xenopus tropicalis


Alignment Length:1085 Identity:201/1085 - (18%)
Similarity:405/1085 - (37%) Gaps:237/1085 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 IDLVMNPM-----TQQQARLEAYMACERFKEESPMCAQVGLFLASSPQSNQQVRHFGLQLIEYTI 77
            :|.|:|.:     .||:...|   .....||......:|...|..|  .|...:::|||::|..|
 Frog    28 LDNVVNCLYHGEGAQQRMAQE---VLTHLKEHPDAWTRVDTILEFS--QNMNTKYYGLQILENVI 87

  Fly    78 KYRWNCITHEEKVYIKDNAIKMLNVGVGPAEDRSLLPTKDA----LSRIIVEMIKREWPQQWSDL 138
            |.||..:...:...||...:.::   :..:.|.:.:..:..    |:.|:|:::|:|||:.|...
 Frog    88 KTRWKILPRNQCEGIKKYVVGLI---IKTSSDATCVEKEKVYIGKLNMILVQILKQEWPKHWPTF 149

  Fly   139 LPELSQACTKGEAQTELVLLVFLRLVEDVALLQTIESNQ-RRKDMYQALNNNMNDIFEFFLRLVE 202
            :.::..|....|:..:..:::...|.|:|....:.:..| :.|.:..::.|..:.||:       
 Frog   150 ISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQ------- 207

  Fly   203 QHVTAFRETTRLCNYTKANA-HSRVVEMVLLTLSGFVEWVSIQHIMSSNGKLMHFLCI-LLNDKA 265
                       ||.:...|: ::.:|...|.||..|:.|:.:.:|..:  ||:..|.. .||...
 Frog   208 -----------LCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFET--KLISTLIYKFLNVPM 259

  Fly   266 FQCNAAECLAQITNRKGQTKERKPLLQLFNEEPLRYIYQASQIPADTSSTLAV----EQHLNFLK 326
            |:..:.:||.:|........|.: .:.||.   |..:.....:|.:|:..||.    :...||::
 Frog   260 FRNVSLKCLTEIAGVSVSQYEEQ-FVTLFT---LTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQ 320

  Fly   327 KLLQVLNGMAQ---QLVALWGKDDATQRPVHL-EVLLECL--LLLVQHP------SLGLSHGSAL 379
            .|...|....:   ||:         ::.::| |.|:|.|  :|||...      .:.|.:.:.|
 Frog   321 NLSLFLCTFLKEHGQLI---------EKRLNLRETLMEALHYMLLVSEVEETEIFKICLEYWNHL 376

  Fly   380 IWQLLLKHEPSSKDFAMVN-------------YIPKLIHTIAPRIVKLPYPASASSPASLSTEAY 431
            ..:|..:...|:....:::             |:|.|..      |:|...:..:.|     |..
 Frog   377 AAELYRESPFSTSASPLLSGSQHFDVPPRRQLYLPVLSK------VRLLMVSRMAKP-----EEV 430

  Fly   432 IRLEHDSEEEYALYFFRCRTDFLEIFR--LATLVQ-PLVTYGYCEQWLQQRLRNAQIEADAEVKS 493
            :.:|:|..|  .:..|...||.:.:::  ..|||. ..:.|...|:.:.::|.|.....:...|:
 Frog   431 LVVENDQGE--VVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKLHNQVNGTEWSWKN 493

  Fly   494 GNVSC----SVLDPVYLEWDA--LVSVLDGVL----------------SRILLVAERPSVPAGLR 536
            .|..|    |:...::.|.:.  ||:|:..:|                |.|:.:..:  .|..||
 Frog   494 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQ--YPRFLR 556

  Fly   537 LLEECLKLETINPLTYSILLSCISALFVFLSMS-------ACQI---TATNC----VAMSGVSLL 587
                         ..:..|.:.::.||.|:..:       ||..   .|..|    |.:....::
 Frog   557 -------------AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVM 608

  Fly   588 P---RVLDKIFRALVMKPPNELE--------KVQAKSAKNLRRHAASLLVKLAHKYPLLLLP--- 638
            |   .:|:.|...:....|.::.        .:.|::.:.::.|       |..||  :|||   
 Frog   609 PFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEH-------LIEKY--MLLPNQV 664

  Fly   639 ---VFEQINGHVELLLKEPGKHQLCRLMRTTLQEALILISNHFCDFERQTLFIEHIVQDKRTEWL 700
               :.:|...:|::|.......||..:::|.:: |...:.:.|      .:.:..|..|....:.
 Frog   665 WDSIIQQATKNVDILKDPETVKQLGSILKTNVR-ACKAVGHPF------VIQLGRIYLDMLNVYK 722

  Fly   701 AFGDALKSPLDFMSFVGLDKPPIFAVEGAVTLQNRSRLLDALHVVLGVVKRCTWPDDPERAQRGG 765
            ...:.:.:.:.....:...:|.|.::        |:...:.|.::.|.|.|.:   ||:..    
 Frog   723 CLSENISAAIQANGEMVTKQPLIRSM--------RTVKRETLKLISGWVSRSS---DPQMV---- 772

  Fly   766 FVIGCTELGNPICRNPATKHIVPLLSHVL-SLMRVLNELFAPEALQALSEGYRGIHGMMEHE-KK 828
                            |...:.|||..|| ...|.:.....||.|..::.....:.|.:..| .:
 Frog   773 ----------------AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITAEIPQ 821

  Fly   829 LLMGICALPTDPLDTTIRSEPTAFEKMQTFMMMVTEGCYHLMGSAGPSLGRDLYQLMGLSDAIVT 893
            :...:.....:.::......|.........:..|...|:....:..|:      |...:.|:|:.
 Frog   822 IFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPA------QFKLVLDSIIW 880

  Fly   894 NVFSRMDLVPDYRLRPIIRVFFKPFVY--SCPPSFYDSVLVPLFAHLAPLMCER-----LTRR-- 949
            .....|..|.|..|: |:....:....  :...|||.:....:..|:..::.:.     ||..  
 Frog   881 AFKHTMRNVADTGLQ-ILYTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHAS 944

  Fly   950 -WIYIASLYESGQLDGEVNDTQEVLEDQLNRTLTREYL-DVLKIA 992
             ..|:.:|.|.|::...:|....:    .|:...:||: ::||.|
 Frog   945 ILAYMFNLVEEGKISTPLNQASPL----SNQLFIQEYVANLLKSA 985

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ranbp21NP_001285453.1 IBN_N 34..101 CDD:281761 16/66 (24%)
Xpo1 116..274 CDD:285575 34/164 (21%)
xpo1XP_002939551.2 CRM1 15..1044 CDD:227432 201/1085 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D40069at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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