DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp10 and ACT4

DIOPT Version :9

Sequence 1:NP_001285452.1 Gene:Arp10 / 32969 FlyBaseID:FBgn0031050 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001078769.1 Gene:ACT4 / 836056 AraportID:AT5G59370 Length:377 Species:Arabidopsis thaliana


Alignment Length:381 Identity:78/381 - (20%)
Similarity:153/381 - (40%) Gaps:54/381 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PIVLDIGTAYTKLGFAAEAYPRKIMPTEV-------VMTTTG-----------IRKRLFDYDTPE 59
            |:|.|.||...|.|||.:..||.:.|:.|       ||...|           .::.:.....|.
plant     9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPI 73

  Fly    60 E-----LYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRETLARVLFVHFDVSSVLFVP 119
            |     .:|.:.......|:..|.|:|:|...:|.|........||.:.:::|..|:..::....
plant    74 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 138

  Fly   120 VHLIALSTLAVPTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGGSAIHAEIKRQLVESGVKES 184
            ..:::|......|.:|:|.|...:..:|::.|..:..|.......|..:...:.:.|.|.|...:
plant   139 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFT 203

  Fly   185 LLTE-SVLEDIKVRTCFVT-----TMERAKARANGDENQPTPAPDVDYIVSDNDAVIQVPGLLRE 243
            ...| .::.|:|.:..::.     .:|.:|..::.:::...|           |..:...|..|.
plant   204 TTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELP-----------DGQVITIGAERF 257

  Fly   244 SAYEIMFEAS---NERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGLLARLRQELQHL 305
            ...|::|:.|   .|...:......||:.|.:|:|:.|..::.|.||.:|..|:..|:.:|:..|
plant   258 RCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIGDRMSKEITAL 322

  Fly   306 LTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGALCGATDLIQTRSLVKETYLKS 361
            ..          ..::.|.. |..::.::.|:||::..:....|...:.|..|.:|
plant   323 AP----------SSMKIKVV-APPERKYSVWIGGSILASLSTFQQMWIAKAEYDES 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp10NP_001285452.1 ACTIN 11..340 CDD:214592 73/358 (20%)
NBD_sugar-kinase_HSP70_actin 12..367 CDD:302596 78/381 (20%)
ACT4NP_001078769.1 NBD_sugar-kinase_HSP70_actin 5..377 CDD:418402 78/381 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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