DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp10 and actr3

DIOPT Version :9

Sequence 1:NP_001285452.1 Gene:Arp10 / 32969 FlyBaseID:FBgn0031050 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001003944.1 Gene:actr3 / 406250 ZFINID:ZDB-GENE-040428-2 Length:418 Species:Danio rerio


Alignment Length:444 Identity:100/444 - (22%)
Similarity:169/444 - (38%) Gaps:117/444 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PPIVLDIGTAYTKLGFAAEAYPRKIMPTEVVMTTTG-----IRKRL------FDY-------DTP 58
            |..|:|.||.|||||:|....|:.|:|:.:.:..:.     .::|:      .|:       |.|
Zfish     6 PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRMMKGVDDLDFYIGDEAIDKP 70

  Fly    59 E------------ELYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRETLARVLFVHFD 111
            .            |.:|.:..|::.:.||:|...|::..|:|.|....:...||..|.::|..|:
Zfish    71 TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFN 135

  Fly   112 VSSVLFVPVHLIALS-----------TLAVPTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGG 165
            |..:......::||:           ||   |..|:|.|...|.|:||..|..|          |
Zfish   136 VPGLYIAVQAVLALAASWTSRQVGERTL---TGTVIDSGDGVTHVIPVAEGYVI----------G 187

  Fly   166 SAI-HAEIKRQLVESGVKESLLTESVLEDIKVRTCFVTTMERAKARANGDENQPTPAPDV--DYI 227
            |.| |..|      :|...:..|:.:|.:.:|......::|.|||   ..|......||:  ::.
Zfish   188 SCIKHIPI------AGRDITYFTQQLLREREVGIPPEQSLETAKA---VKERFSYVCPDLVKEFS 243

  Fly   228 VSDNDA---VIQVPGLLRESAYEIMFEASNERDSLPHLILRS------------------ILDCT 271
            ..|.|.   :.|..|:...|..|...:...||...|.:....                  |.:|.
Zfish   244 KYDTDGSKWIKQYTGINTISKKEFTIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCP 308

  Fly   272 LDVRRALVESVFLVGGGSMVQGLLARLRQELQHLLTEDPFYAERFHGELQFKFFNAVGK------ 330
            :||||.|.:::.|.||.:|.:....||:::|:..:......:|...|          ||      
Zfish   309 IDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSG----------GKLKPKPI 363

  Fly   331 ---------QNFTAWLGGALCGATDLIQTRSLVKETYLKSEHVPDWSNLCDNRP 375
                     |.:..|.||::     |..|....:..:.|.::.....::|.:.|
Zfish   364 DVQVITHHMQRYAVWFGGSM-----LASTPEFYQVCHTKKDYEEIGPSICRHNP 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp10NP_001285452.1 ACTIN 11..340 CDD:214592 94/407 (23%)
NBD_sugar-kinase_HSP70_actin 12..367 CDD:302596 98/434 (23%)
actr3NP_001003944.1 PTZ00280 2..417 CDD:240343 100/444 (23%)
COG5277 6..410 CDD:227602 99/440 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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