DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp10 and Actrt3

DIOPT Version :9

Sequence 1:NP_001285452.1 Gene:Arp10 / 32969 FlyBaseID:FBgn0031050 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001102412.1 Gene:Actrt3 / 365763 RGDID:1561457 Length:371 Species:Rattus norvegicus


Alignment Length:374 Identity:77/374 - (20%)
Similarity:140/374 - (37%) Gaps:64/374 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 KPPIVLDIGTAYTKLGFAAEAYPRKIMPT----------------EVVMTTTGIRKRLF---DYD 56
            :||:|:|.|:...|.|.|....|:.:.|.                |:.:......:|.|   .|.
  Rat     5 QPPVVIDNGSGMIKAGLAGAREPQFVYPNILGRTKNHSPAADSKQELRVGDQAQERRSFLSISYP 69

  Fly    57 TPEELYDQLVDFLQTIFFKH-----LLVSPKERKFVLVENVFGSTVLRETLARVLFVHFDVSSVL 116
            ....|.....|  ..|.:||     |.::|.:...::.|........|:.::.|.|.:..|.:..
  Rat    70 VERGLISSWGD--MEIMWKHIYDYNLNLNPSDGPVLVTEPALNPLADRQHISEVFFENLGVPAFY 132

  Fly   117 FVPVHLIALSTLAVPTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGGSAIHAEIKRQLVESGV 181
            .....::||......|.||::.|...|..:|:|.|..:....|..:..|..:...:...|.:.|:
  Rat   133 MSVQAVLALFAAGFTTGLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGIDLTNYLMMLLKDDGI 197

  Fly   182 KESLL---TESVLEDIKVRTCFVTTMERAKARANGDENQPTPAPDVD--YIVSDNDAVIQVPGLL 241
              .||   ....:.|||...|:|.        .|.|| :.....:|:  |.:.|...|     .|
  Rat   198 --MLLRTGDRKTVTDIKENACYVA--------MNYDE-EMVKESNVEKMYTLPDGKTV-----KL 246

  Fly   242 RESAY---EIMFE---ASNERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGLLARLRQ 300
            |:..:   |.:|.   .:.:...:..:...||:.|..|:|.:...::.|.||.:...||..||.:
  Rat   247 RKQVFRCPEALFSPYLVNVDAPGIDRICFSSIMKCDADLRNSFFSNIILSGGSTSFPGLDKRLIK 311

  Fly   301 ELQHLLTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGALCGATDLIQ 349
            ::..|...:.        .:|..   |..::..:.|:||::..:....|
  Rat   312 DVAKLAPANT--------TVQVV---APPERKISVWMGGSILASLSAFQ 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp10NP_001285452.1 ACTIN 11..340 CDD:214592 75/363 (21%)
NBD_sugar-kinase_HSP70_actin 12..367 CDD:302596 77/373 (21%)
Actrt3NP_001102412.1 ACTIN 5..371 CDD:214592 77/374 (21%)
NBD_sugar-kinase_HSP70_actin 9..371 CDD:302596 75/370 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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