DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp10 and Actrt2

DIOPT Version :9

Sequence 1:NP_001285452.1 Gene:Arp10 / 32969 FlyBaseID:FBgn0031050 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001013959.1 Gene:Actrt2 / 298671 RGDID:1359657 Length:377 Species:Rattus norvegicus


Alignment Length:377 Identity:93/377 - (24%)
Similarity:153/377 - (40%) Gaps:68/377 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 IYESVMQEKPPIVLDIGTAYTKLGFAAEAYPRKIMPTEV------VMTTTGIRKR-------LFD 54
            ::..::.:.|.::.|.|:...|.|.:.|..||.:..:.|      ...|...:|:       ||.
  Rat     1 MFNPLVLDSPSVIFDNGSGLCKAGLSGEIGPRHVTSSVVGYPKFKASPTGACQKKYFVGEEALFK 65

  Fly    55 YDT-----PEE-----LYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRETLARVLFVH 109
            .:|     |.|     .:|.:....:.:|...|.|.|.||..::.|........||..|.|:|..
  Rat    66 QETLRLQSPIERGLITSWDDIEKLWRHLFEWELGVKPSERPVLMTEPSLNPRENREKTAEVMFET 130

  Fly   110 FDVSSVLFVPVHLIALSTLAVPTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGGSAIHAEIKR 174
            |:|.:.......::||.:.|..|.||||.|...|..:|:|.|..:..|.......|..|...:.|
  Rat   131 FEVPAFYLSDQAVLALYSSACVTGLVVDSGDGVTCTVPIFEGYSLPHAVSKLFVAGKDITELLTR 195

  Fly   175 QLVESG-VKESLLTESVLEDIKVRTCFVT-TMERAKARANGDENQPTPAPD--VDYIVSDNDAVI 235
            .|:.|| .....|.:::::|||.:.|:|. ..|...:|...|..:....||  |.||   .|.:.
  Rat   196 LLLASGRAFPCPLDKALVDDIKEKLCYVALEPEEELSRRAEDVLREYKLPDGNVIYI---GDQLY 257

  Fly   236 QVPGLLRESAYEIMF---EASNERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGLLAR 297
            |.|        |::|   :.......|..:...||..|..|:::.|...:.|.||.::.|||..|
  Rat   258 QAP--------EVLFSPDQLGTHGPGLAQMASNSIAKCDADIQKTLFGEIVLSGGSTLFQGLDDR 314

  Fly   298 LRQELQHL--------LTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGAL 341
            |.:||:.|        :|..|   :|:                |:.|:|.::
  Rat   315 LLKELEQLASKGVPIKITAPP---DRW----------------FSTWIGASI 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp10NP_001285452.1 ACTIN 11..340 CDD:214592 93/366 (25%)
NBD_sugar-kinase_HSP70_actin 12..367 CDD:302596 93/368 (25%)
Actrt2NP_001013959.1 NBD_sugar-kinase_HSP70_actin 6..377 CDD:302596 93/372 (25%)
ACTIN 10..377 CDD:214592 93/368 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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