DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp10 and Actg2

DIOPT Version :9

Sequence 1:NP_001285452.1 Gene:Arp10 / 32969 FlyBaseID:FBgn0031050 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_037025.1 Gene:Actg2 / 25365 RGDID:2027 Length:376 Species:Rattus norvegicus


Alignment Length:389 Identity:85/389 - (21%)
Similarity:155/389 - (39%) Gaps:68/389 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QEKPPIVLDIGTAYTKLGFAAEAYPRKIMPTEV-------VMTTTGIR----------KR----- 51
            :|...:|.|.|:...|.|||.:..||.:.|:.|       ||...|.:          ||     
  Rat     4 EETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 68

  Fly    52 --------LFDYDTPEELYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRETLARVLFV 108
                    :.::|..|:::..       .|:..|.|:|:|...:|.|........||.:.:::|.
  Rat    69 KYPIEHGIITNWDDMEKIWHH-------SFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 126

  Fly   109 HFDVSSVLFVPVHLIALSTLAVPTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGGSAIHAEIK 173
            .|:|.::......:::|......|.:|:|.|...|..:|::.|..:..|.......|..:...:.
  Rat   127 TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM 191

  Fly   174 RQLVESGVKESLLT---ESVLEDIKVRTCFVT---TMERAKARANGDENQPTPAPDVDYIVSDND 232
            :.|.|.|.  |.:|   ..::.|||.:.|:|.   ..|.|.|.::....:....||...|...|:
  Rat   192 KILTERGY--SFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNE 254

  Fly   233 AVIQVPGLLRESAYEIMFEAS---NERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGL 294
                     |....|.:|:.|   .|...:......||:.|.:|:|:.|..:..|.||.:|..|:
  Rat   255 ---------RFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGI 310

  Fly   295 LARLRQELQHLLTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGALCGATDLIQTRSLVKETY 358
            ..|:::|:..|..          ..::.|.. |..::.::.|:||::..:....|...:.|..|
  Rat   311 ADRMQKEITALAP----------STMKIKII-APPERKYSVWIGGSILASLSTFQQMWISKPEY 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp10NP_001285452.1 ACTIN 11..340 CDD:214592 80/367 (22%)
NBD_sugar-kinase_HSP70_actin 12..367 CDD:302596 84/386 (22%)
Actg2NP_037025.1 PTZ00281 1..376 CDD:173506 85/389 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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