DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp10 and actl6a

DIOPT Version :9

Sequence 1:NP_001285452.1 Gene:Arp10 / 32969 FlyBaseID:FBgn0031050 Length:378 Species:Drosophila melanogaster
Sequence 2:XP_005165974.1 Gene:actl6a / 192313 ZFINID:ZDB-GENE-020419-36 Length:455 Species:Danio rerio


Alignment Length:455 Identity:82/455 - (18%)
Similarity:154/455 - (33%) Gaps:136/455 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 IVLDIGTAYTKLGFAAEAYPRKIMPTEVVMT-----------TTGIRKR----LFDYDTPE---- 59
            :|.|:|:...:.|:|.|..|:...||.:.:|           |.|.:.:    .:..||.:    
Zfish    14 LVFDMGSYSVRAGYAGEDCPKADFPTVIGVTLDREDGSTPMETDGEKGKQSGTTYFIDTNQLRVP 78

  Fly    60 ---------------ELYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRETLARVLFVH 109
                           |.:|.....|...:..|....|.....::.|..:.:...||.|..::|.|
Zfish    79 RESMEVMSPLKNGMIEDWDSFQAILDHTYKMHFKSQPGLHPVLMSEASWNTRAKREKLTELMFEH 143

  Fly   110 FDVSSVLFVPVHLIALSTLAVPTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGGSAIHAEIKR 174
            :::.:.......:::.......|.||:|.|.:.|:.:||..|..:..........|..:..:.:.
Zfish   144 YNIPAFFLCKSAVLSAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFMSMQCRE 208

  Fly   175 QLVESGV--------------------------------------------------KESL---- 185
            ...|.||                                                  ||.|    
Zfish   209 LFQELGVEIVPPYMIASKVRPFEGYDSQLIKMFESNNFIMFSLKDSVREGTPASWKKKEKLPQVT 273

  Fly   186 ------LTESVLEDIKVRTCFVTTMERAKARANGDENQPTPAPDVDYIVSDNDAVIQVP------ 238
                  :..:|::|.:.....|:.       :..||......|.|.|         ::|      
Zfish   274 RSWHNYMCNTVIQDFQASVLQVSD-------SPYDEQVAAQMPTVHY---------ELPNGYNCD 322

  Fly   239 -GLLRESAYEIMFEASNERD-------SLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGLL 295
             |..|....|.:|:.||.:.       .:.|::..|:..|.:|:|..|..||.:.||.:::||..
Zfish   323 FGAERLKIPEGLFDPSNAKGLSGNTMLGVGHVVTTSVGMCDIDIRPGLYGSVVVTGGNTLIQGFT 387

  Fly   296 ARLRQELQHLLTEDPFYAERFHGELQFKFF--NAVGKQNFTAWLGGALCGATDLIQTRSLVKETY 358
            .||.:||          :::....::.|..  |...::.|:||:||::..:....|...:.|:.|
Zfish   388 DRLNREL----------SQKTPPSMRLKLIANNTTVERRFSAWIGGSILASLGTFQQMWISKQEY 442

  Fly   359  358
            Zfish   443  442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp10NP_001285452.1 ACTIN 11..340 CDD:214592 78/435 (18%)
NBD_sugar-kinase_HSP70_actin 12..367 CDD:302596 82/455 (18%)
actl6aXP_005165974.1 NBD_sugar-kinase_HSP70_actin 10..454 CDD:302596 82/455 (18%)
Actin 11..455 CDD:278451 82/455 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.