DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd-1 and AT5G12980

DIOPT Version :9

Sequence 1:NP_608335.1 Gene:Rcd-1 / 32966 FlyBaseID:FBgn0031047 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_196802.1 Gene:AT5G12980 / 831138 AraportID:AT5G12980 Length:311 Species:Arabidopsis thaliana


Alignment Length:296 Identity:180/296 - (60%)
Similarity:218/296 - (73%) Gaps:13/296 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NPQQQQQQQQQQQQTEQEKVYQWINELAHPDTRETALLELSKKRE--TDLAPMLWNSFGTACALL 72
            :|.......::....|     |.|.:|::|:.||.||.|||||||  .||||:||:|.||..|||
plant    20 SPSSSSNNDRKLSSAE-----QLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALL 79

  Fly    73 QEIVNIYPSITPPTLTAHQSNRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPF 137
            |||:.:||:::|||:|..||||||||||||||||||.:||..||:|.:|||||.||:|:||:|||
plant    80 QEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHTDTRMLFLKAHLPLYLYAFLNTSSKSRPF 144

  Fly   138 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLS 202
            ||||||||||||||||.|:.|||.|||.||||||||..|::||||||||||||:||:|||:.||.
plant   145 EYLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCLRTMENGSELSKTVATFIVQKVLLDDVGLE 209

  Fly   203 YICQTYERFSHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTF 267
            |:|.|.|||..:...||.||..||:.|.||||||::||||||:||.||..|||.||||.|||.||
plant   210 YMCTTAERFFALGRVLGNMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATF 274

  Fly   268 ALCLQEDKSTKQWLQMLLKNLELGATPQQIGMSPLG 303
            :.||.:|....||||.||.|:.:|      |.:|.|
plant   275 SGCLYDDPPAMQWLQQLLHNVNVG------GRAPQG 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd-1NP_608335.1 Rcd1 40..288 CDD:281998 169/249 (68%)
AT5G12980NP_196802.1 Rcd1 37..295 CDD:397961 172/257 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 352 1.000 Domainoid score I216
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 358 1.000 Inparanoid score I597
OMA 1 1.010 - - QHG53719
OrthoDB 1 1.010 - - D1129961at2759
OrthoFinder 1 1.000 - - FOG0003765
OrthoInspector 1 1.000 - - mtm1000
orthoMCL 1 0.900 - - OOG6_102178
Panther 1 1.100 - - O PTHR12262
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2622
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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