DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd-1 and AT3G20800

DIOPT Version :9

Sequence 1:NP_608335.1 Gene:Rcd-1 / 32966 FlyBaseID:FBgn0031047 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_188716.1 Gene:AT3G20800 / 821628 AraportID:AT3G20800 Length:316 Species:Arabidopsis thaliana


Alignment Length:270 Identity:180/270 - (66%)
Similarity:213/270 - (78%) Gaps:2/270 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 QWINELAHPDTRETALLELSKKRE--TDLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAHQSN 93
            |.:.:|::|:.||.||||||||||  .||||:|||||||..|||||||:||..:.||.||..|||
plant    40 QLVLDLSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSN 104

  Fly    94 RVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGALVKTDEQE 158
            ||||:||||||||||.:||..||:|.|||||||||:||||:|||||||||||||||||||.|:.|
plant   105 RVCNSLALLQCVASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTE 169

  Fly   159 VITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERFSHVAITLGKMVI 223
            ||:|||:|||:||||..|:.||||||||||||:||||||:.|:.|||.|.|||..|...||.||.
plant   170 VISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQ 234

  Fly   224 QLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTFALCLQEDKSTKQWLQMLLKNL 288
            .|.:.|..|||||::|||||||||.||..||..||||.||||:|:.||:||.:.::|||.|:.|:
plant   235 SLVEQPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARRWLQQLVHNV 299

  Fly   289 ELGATPQQIG 298
            .:|..|...|
plant   300 GVGRVPTHQG 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd-1NP_608335.1 Rcd1 40..288 CDD:281998 173/249 (69%)
AT3G20800NP_188716.1 Rcd1 41..299 CDD:397961 175/257 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 352 1.000 Domainoid score I216
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3973
Inparanoid 1 1.050 358 1.000 Inparanoid score I597
OMA 1 1.010 - - QHG53719
OrthoDB 1 1.010 - - D1129961at2759
OrthoFinder 1 1.000 - - FOG0003765
OrthoInspector 1 1.000 - - mtm1000
orthoMCL 1 0.900 - - OOG6_102178
Panther 1 1.100 - - LDO PTHR12262
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2622
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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