DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd-1 and Cnot9

DIOPT Version :9

Sequence 1:NP_608335.1 Gene:Rcd-1 / 32966 FlyBaseID:FBgn0031047 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_067358.1 Gene:Cnot9 / 58184 MGIID:1928902 Length:299 Species:Mus musculus


Alignment Length:283 Identity:222/283 - (78%)
Similarity:251/283 - (88%) Gaps:4/283 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 QTEQEKVYQWINELAHPDTRETALLELSKKRET--DLAPMLWNSFGTACALLQEIVNIYPSITPP 85
            |.::||:|||||||:.|:|||.||||||||||:  |||||||:||||..|||||||||||||.||
Mouse    16 QVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPP 80

  Fly    86 TLTAHQSNRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGA 150
            |||||||||||||||||||||||||||:|||.|.|||:|||||.|.|||||||||||||||||||
Mouse    81 TLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145

  Fly   151 LVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERFSHVA 215
            ||||||||||.|||||||:||||.||:|||||||||||||:||||||::||:|||||||||||||
Mouse   146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA 210

  Fly   216 ITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTFALCLQEDKSTKQW 280
            :.|||||:||:|:|.|||||||||||||||||.|||:||.|||||||:|.|||..|::|.:||:|
Mouse   211 MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRW 275

  Fly   281 LQMLLKNLELG--ATPQQIGMSP 301
            |..|:|||:.|  ..|:.|.:.|
Mouse   276 LAQLVKNLQEGQVTDPRGIPLPP 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd-1NP_608335.1 Rcd1 40..288 CDD:281998 205/249 (82%)
Cnot9NP_067358.1 Rcd1 25..283 CDD:397961 211/257 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847062
Domainoid 1 1.000 425 1.000 Domainoid score I613
eggNOG 1 0.900 - - E1_COG5209
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3973
Inparanoid 1 1.050 442 1.000 Inparanoid score I1640
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53719
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003765
OrthoInspector 1 1.000 - - oto95051
orthoMCL 1 0.900 - - OOG6_102178
Panther 1 1.100 - - LDO PTHR12262
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1073
SonicParanoid 1 1.000 - - X2622
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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