DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rcd-1 and CG2053

DIOPT Version :9

Sequence 1:	NP_608335.1	Gene:	Rcd-1 / 32966	FlyBaseID:	FBgn0031047	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_001287632.1	Gene:	CG2053 / 43762	FlyBaseID:	FBgn0039887	Length:	298	Species:	Drosophila melanogaster

Alignment Length:	250	Identity:	100/250 - (40%)
Similarity:	156/250 - (62%)	Gaps:	3/250 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly    21 QQQTEQEKVYQWINELAHPDTRETALLELSKKRE--TDLAPMLWNSFGTACALLQEIVNIYPSIT 83
            :|:.:.:.|:.||..|.:.:||..|:|||.::|.  ..|..:||:|||....||||||:|||:|.
  Fly     9 EQRGDIDSVFGWIANLCNKETRLWAMLELFERRTHIDSLGLLLWHSFGAVSGLLQEIVSIYPAIY 73

  Fly    84 PP-TLTAHQSNRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGV 147
            .. .||..||:|:|.|:.|:|.:||||......::.|...||.|.|..||:||..|::||:.|||
  Fly    74 QEIELTGQQSHRICTAIGLIQAMASHPFIGIQLIRCQFMCYLMPLLKMTSQTRAVEHVRLSVLGV 138

  Fly   148 IGALVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERFS 212
            |..|:|:|..|::::.|.||::||.|..::.|:.:||.:..|::.:.|..|.||.:..:...|..
  Fly   139 ICGLLKSDHPEIVSYFLGTELIPLTLRQLEFGTTMSKVLCAFVLYRTLEHEVGLKFASRRLARKL 203

  Fly   213 HVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTF 267
            |:..||.::|.||..:|..|:||||||.|.||:|:.:..:.:.:.||.|:|:|.|
  Fly   204 HLIHTLARVVHQLTLEPEPRVLKHVVRIYSRLADHPQNLELILKLLPAQIRNGYF 258

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rcd-1	NP_608335.1	Rcd1	40..288	CDD:281998	94/230 (41%)
CG2053	NP_001287632.1	Rcd1	28..258	CDD:281998	94/229 (41%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45464275
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5209
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1129961at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR12262
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	5	4.850