Protein Alignment Rcd-1 and Rcd-1r

DIOPT Version :10

• Sequence 1: NP_608335.1
• Gene: Rcd-1 / 32966
• FlyBaseID: FBgn0031047
• Length: 304
• Species: Drosophila melanogaster
• Sequence 2: NP_609269.1
• Gene: Rcd-1r / 34229
• FlyBaseID: FBgn0032089
• Length: 290
• Species: Drosophila melanogaster
• Alignment Length: 304
• Identity: 199/304 - (65%)
• Similarity: 232/304 - (76%)
• Gaps: 15/304 - (4%)

  Fly     1 MSAQPSPHMNPQQQQQQQQQQQQTEQEKVYQWINELAHPDTRETALLELSKKRETDLAPMLWNSF 65
            |||:|||.|:|         |||.|:|||||.|.|||:|.|||||||||||....|||||||.|.
  Fly     1 MSAEPSPVMSP---------QQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAPMLWKSV 56

  Fly    66 GTACALLQEIVNIYPSITPPTLTAHQSNRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLST 130
            ||.|.||||||||||.||.|.|.|:||||||.||.||||||||||||.|||:.|||:||||||||
  Fly    57 GTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHPETRPAFLRDQIPMYLYPFLST 121

  Fly   131 TSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKIL 195
            |.|:||||.||||:||||.||.:|.:.||:.||:.:|:||.||:.|..||:|:|..||.|::|||
  Fly   122 TFKSRPFEQLRLTTLGVINALAETGDTEVLIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKIL 186

  Fly   196 LDESGLSYICQTYERFSHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPD 260
            |||.||:|||:.::|||.||||||||||.:.|.||.|:|||||||||.|::|.|||.||..||||
  Fly   187 LDEMGLTYICENHDRFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLPD 251

  Fly   261 QLRDGTFALCLQEDKSTKQWLQMLLKNLELGATPQQIGMSPLGS 304
            .||||||...:|.|..||||||||||||:..|      ::|:||
  Fly   252 LLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNA------VNPMGS 289

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcd-1	NP_608335.1	Rcd1	32..288	CDD:461160	176/255 (69%)
Rcd-1r	NP_609269.1	Rcd1	23..279	CDD:461160	176/255 (69%)