DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment e(y)3 and chm

DIOPT Version :9

Sequence 1:NP_001259719.1 Gene:e(y)3 / 32965 FlyBaseID:FBgn0087008 Length:2012 Species:Drosophila melanogaster
Sequence 2:NP_001260192.1 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster


Alignment Length:637 Identity:128/637 - (20%)
Similarity:221/637 - (34%) Gaps:183/637 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AVESAAATSTAGSAGAAGRPQSNCSANSNAKSVAASSTSEEEQRV-SSTSSPAQRDQQLNADRDR 86
            |:||.:::|.:||:..:|...|...::|:..|  :|:|.||:... ||..|..|..||.|:...:
  Fly     2 ALESGSSSSESGSSSTSGSTSSETGSSSDTDS--SSATPEEKPSTNSSAKSQTQTQQQTNSGNAQ 64

  Fly    87 EQEPEPQQQQQREEALQHQHNQPGHITSTTASPPPTLPPPTTPCDDAPSTTGASASASSASGEAP 151
            .::|.|...:.:                    |.|::.|.:...::.|.:. .|:........||
  Fly    65 RRKPVPAASEDK--------------------PKPSVAPSSKKVNNPPKSK-LSSDDDEYEDSAP 108

  Fly   152 SAASAAGAAGGPMAATALEVESEERDGHKIILKLS----KHANP-----NSNANESQPGGDERRV 207
            .|...:.|.|......|....:..|.....:.|.|    |.:||     |:|.|.|...|:.:| 
  Fly   109 PAKKNSRAMGSSTVTAAAAASAARRKPPASVNKPSNPANKPSNPTQRSANNNTNRSLENGEGKR- 172

  Fly   208 EPLRIQLPCGGAEGGLVAKQQDAFDADASSCSSSCAEDEVATTLGQQLRNTPHIVPKLTIRAANE 272
                                      .:.|.||:..:|.:......:         |:.::.|: 
  Fly   173 --------------------------PSLSSSSNSTDDSMKIVKNGR---------KVPLKMAS- 201

  Fly   273 RRVGSVVPK-LTIKLPENPAASG-----SNSNSGSCSAAVSGAQSAMPAKNDAHLSSLSPASASS 331
                :|.|| :..|||......|     |:.:|||.|.:.||.:|                |:.|
  Fly   202 ----TVRPKQIRGKLPPAKKNGGGPVISSDGSSGSESGSNSGDES----------------SSGS 246

  Fly   332 SSASSSSSSSSSSSLAEMQTVPKLMIKTTLAGSSCISSSEELPQQQQQIPKLTIKTGGGGQEHVH 396
            .|..|.||:|.||...:.....|....|.:..|   .|.||...:...:.|||            
  Fly   247 ESEGSDSSNSYSSQPVKGGAKGKRSGPTKIQNS---DSEEERKDKANPMRKLT------------ 296

  Fly   397 TVIMTHDLNNAQSIPKLTIKTKSIEMIEDEQAAKLEQQLQPLPKLTIKNLCSPKHKVRAVLEEKP 461
               .:..:...:..||....::|...:||:   |:.....|..|....||.:.|.||:     :.
  Fly   297 ---RSLSMRRTKQQPKQETDSESDGDLEDD---KIMISKSPAKKPAPSNLNASKSKVK-----RE 350

  Fly   462 PTAASKLAIPKPTPNPTPAPMTNGGESNSSSQEFCGFSDPDADIAAPASDDVRRNSDDMVIDDSL 526
            |...|...:......|. :|:|       .:::.|.....|      :|..:..|.|...:.::.
  Fly   351 PIGISSGVLSSIKSRPV-SPIT-------QTEKKCPIEGCD------SSGHLSGNLDKHFLPEAC 401

  Fly   527 SKEHDPKIFHNLPPMPASNGIASGGSKASKASKSAQSQHNVVDMVDLTSSPSPGSSPTHV----- 586
                  .|:||   |.||........:..:..:..:...|:|        .:||:..|::     
  Fly   402 ------PIYHN---MSASECKERANERKLRNEQRLKMPVNIV--------TAPGNQNTNLKTLSP 449

  Fly   587 -PNNFTGRISPKGLLIDCLRMQTAIGCYVPEEADSRVRPAASPNSNILLSQL 637
             ...|..:|                     .|:.:..:||   |:|.|.|::
  Fly   450 EQREFLAKI---------------------RESRANFKPA---NNNFLDSKV 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
e(y)3NP_001259719.1 PHD_SF 1700..1754 CDD:304600
RanBP2-type Zn finger 1700..1725 CDD:275375
RanBP2-type Zn finger 1749..1775 CDD:275375
PHD2_PHF10 1756..1799 CDD:277004
chmNP_001260192.1 zf-C2HC 376..402 CDD:279824 5/37 (14%)
NAT_SF 526..802 CDD:302625
MOZ_SAS 584..766 CDD:280097
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463877
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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