DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS10b and AT5G52650

DIOPT Version :9

Sequence 1:NP_001245758.1 Gene:RpS10b / 32953 FlyBaseID:FBgn0285947 Length:160 Species:Drosophila melanogaster
Sequence 2:NP_200077.1 Gene:AT5G52650 / 835342 AraportID:AT5G52650 Length:179 Species:Arabidopsis thaliana


Alignment Length:174 Identity:87/174 - (50%)
Similarity:108/174 - (62%) Gaps:25/174 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHY 65
            |.:.:|:|..|.:|||||||..|||||:..||| |..:|||.|||.|||..|:..|:|.|||.||
plant     1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHP-LIDVPNLQVIKLMQSFKSKEYVRETFAWMHY 64

  Fly    66 YWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRP--RPAVGGP-----RGP----GDASKT 119
            ||:|||||||.||:||:||.::||:|||:.|     :|  || .|||     |||    ||..:.
plant    65 YWFLTNEGIEFLRTYLNLPSDVVPATLKKSA-----KPGGRP-FGGPPGDRSRGPRHEGGDRPRF 123

  Fly   120 GEDRSAYRRAP--GGSGVDKKGDVGPGAGEVEFRG---GFGRGS 158
            | ||..||..|  ||....:||. .|...:..|:|   |||||:
plant   124 G-DRDGYRAGPRAGGEFGGEKGG-APADYQPSFQGSGRGFGRGA 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS10bNP_001245758.1 S10_plectin 3..96 CDD:281497 56/92 (61%)
AT5G52650NP_200077.1 S10_plectin 3..94 CDD:397530 56/91 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 122 1.000 Domainoid score I1845
eggNOG 1 0.900 - - E1_COG5045
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H134225
Inparanoid 1 1.050 148 1.000 Inparanoid score I1727
OMA 1 1.010 - - QHG53709
OrthoDB 1 1.010 - - D1588066at2759
OrthoFinder 1 1.000 - - FOG0001119
OrthoInspector 1 1.000 - - mtm1126
orthoMCL 1 0.900 - - OOG6_101133
Panther 1 1.100 - - O PTHR12146
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X688
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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