DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS10b and AT4G25740

DIOPT Version :10

Sequence 1:NP_608324.1 Gene:RpS10b / 32953 FlyBaseID:FBgn0285947 Length:160 Species:Drosophila melanogaster
Sequence 2:NP_194304.1 Gene:AT4G25740 / 828679 AraportID:AT4G25740 Length:177 Species:Arabidopsis thaliana


Alignment Length:174 Identity:86/174 - (49%)
Similarity:107/174 - (61%) Gaps:27/174 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHY 65
            |.:.:.:|..|.:|||||||..|||||:..||| |..:|||.|||.|||..|:..|:|.|||.||
plant     1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHP-LIDVPNLQVIKLMQSFKSKEYVRETFAWMHY 64

  Fly    66 YWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRP--RPAVGGP-----RGP----GDASKT 119
            ||:|||||||.||:||:||.::||:|||:.|     :|  || .|||     |||    ||..:.
plant    65 YWFLTNEGIEFLRTYLNLPSDVVPATLKKSA-----KPGGRP-FGGPPGDRQRGPPRSDGDRPRF 123

  Fly   120 GEDRSAYRRAPGGSGVDKKGDVGPGAGEVEFRG-----GFGRGS 158
            | ||..||..|.|.  |:||. .|...:..|:|     |||||:
plant   124 G-DRDGYRGGPRGG--DEKGG-APADFQPSFQGGGGRPGFGRGA 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS10bNP_608324.1 S10_plectin 3..95 CDD:427337 55/91 (60%)
AT4G25740NP_194304.1 S10_plectin 3..94 CDD:427337 55/91 (60%)

Return to query results.
Submit another query.