DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and vps45

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001072504.1 Gene:vps45 / 779959 XenbaseID:XB-GENE-961682 Length:570 Species:Xenopus tropicalis


Alignment Length:625 Identity:131/625 - (20%)
Similarity:230/625 - (36%) Gaps:149/625 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 KLFADR--GIRLLALKPELHLPREVANVVY----VMRPRVALMEQLAA-------HVKA--GGRA 104
            |:..|.  |:::|.:..|   ...|.::||    :::..|.|.|::.:       |:||  ..|.
 Frog    13 KMIEDSGPGMKVLLMDKE---TTSVVSMVYTQSEILQKEVYLFERIDSTNRESMKHLKAICFLRP 74

  Fly   105 AAGRQYHILFAPRRSCLCVSQLEVSGVLGS--------------FGNIEELAWNYLPLDVDLVSM 155
            ......:::...||....|..|..|.|:..              ...::|...:|:.::..:.|:
 Frog    75 TKENVEYLIKELRRPKYSVYFLYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHVFSL 139

  Fly   156 EMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGK--GEFAHRVWEHAKQLGRDERTLY 218
            .:...::  ..:.|...||:...||..|.....:.|.|..:  .:.|.|:.|..||:...|..|:
 Frog   140 NIVGCYQ--GRNWDAVHLYRTTQGLTALLLSLKKCPMIRYQLSSDMAKRLAEGVKQVITKEYELF 202

  Fly   219 NGDKGVVDQLIL-LDRSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLPAENFPSDGALPGGGGSG 282
            ...:..|..|:| ||||.|.::||..|.||:.::.|..||..|::.|        ..:||     
 Frog   203 EFRRTEVPPLLLILDRSDDAITPLLNQWTYQAMVHEMLGINNNRIDL--------SRVPG----- 254

  Fly   283 PRVEESQSLLGDTEKKTILLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQD-KSVQE 346
                     :....|:.:|....::.||.....:|.|:...:.....:...:.....|. :|:.:
 Frog   255 ---------ISKDLKEVVLSAENDEFYANNMYLNFGEIGTNIKNLMEDFQKKKPKGQQKLESISD 310

  Fly   347 IKSFVENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKPSAYIEDLI 411
            :|:|||| .||........|:|..:.|.|..          |.:|:..|..::       :|..:
 Frog   311 MKAFVEN-YPQFKKMSGTVSKHVTVVGELSR----------LVSERHLMEVSE-------VEQEL 357

  Fly   412 ACRVE----LNRVLRLICMQCHAASGFKEKLLNHYKRELVHVYGLEVLLTISNLEKSGLLHLQTE 472
            ||:.:    |..|.||:..|         :|.......||.:|.|......||    .|..|..:
 Frog   358 ACQNDHSNALQNVKRLLQNQ---------RLAELDATRLVMLYALHYERHSSN----ALSSLLND 409

  Fly   473 SRAYSVLRKTLHLTVDDNVE-----------IEPKD--------------ISYVHSFYAPLTARI 512
            .|...|..|...| |...||           ..|||              :..|::.:.|.....
 Frog   410 LRVRGVSEKYRRL-VSAVVEYGGKRVRGSDLFSPKDAVAITKQFFKGLKGVENVYTQHQPFLLDT 473

  Fly   513 VEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGRHTVTTVSEGSLLNVPRVVLVCFVGGCT 577
            ::..:|    ..||..:....||                       .:|.:.|:.::|..|||.|
 Frog   474 LDQLIK----GKLKDNLYPYLGP-----------------------NTLRDRPQDIIVFMVGGAT 511

  Fly   578 FAEIAALRFLAAQEDNNVEFLIATTKVVNKHSFLDSLMSS 617
            :.|..|: :...:....|..::..|.:.|..|||:.:.|:
 Frog   512 YEEAFAV-YNLNRTTPGVRIVLGGTAIHNTKSFLEEVQSA 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 126/612 (21%)
vps45NP_001072504.1 Sec1 23..539 CDD:279352 123/602 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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