DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and vps45

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001243585.1 Gene:vps45 / 561653 ZFINID:ZDB-GENE-060503-526 Length:568 Species:Danio rerio


Alignment Length:631 Identity:131/631 - (20%)
Similarity:244/631 - (38%) Gaps:151/631 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GIRLLALKPELHLPREVANVVY----VMRPRVALMEQLAA-------HVKA--GGRAAAGRQYHI 112
            |:::|.:..|   ...:.:|||    :::..|.|.|::.:       |:||  ..|.......|:
Zfish    21 GMKVLLMDKE---TTSIVSVVYTQSEILQKEVYLFERIDSQNRDNMKHLKAICFLRPTKENVEHL 82

  Fly   113 LFAPRRSCLCVSQLEVSGVLGS--------------FGNIEELAWNYLPLDVDLVSMEMPNAFRD 163
            :...||....|..:..|.|:..              ...::|...:::.::..|.|:.:....|.
Zfish    83 IQELRRPKYSVYFIYFSNVISKSEVKALAEADEQEVVAEVQEFYGDFIAVNPHLFSLNLQGVSRG 147

  Fly   164 VSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGK--GEFAHRVWEHAKQLGRDERTLYNGDKGVVD 226
            .|  .:.|.|.:...||..:.....:.|.|..:  .:.:.|:.|..||:...|..|::..|..|.
Zfish   148 RS--WEPSVLPRVTQGLTSVLLSLKKCPMIRYQLSSDMSKRLAESVKQIITKEYELFDFRKTEVP 210

  Fly   227 QLIL-LDRSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQS 290
            .|:| ||||.|.::||..|.||:.::.|..|:..|::.|        ..:||             
Zfish   211 PLLLILDRSDDAITPLLNQWTYQAMVHELLGLNNNRIDL--------SRVPG------------- 254

  Fly   291 LLGDTEKKTILLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQD-KSVQEIKSFVENL 354
             :....::.:|....::.||.....:|.|:...:.....:...:.....|. :|:.::|:|||| 
Zfish   255 -ISKDLREVVLSAENDEFYANNLYLNFGEIGTNIKNLMEDFQKKKPKDQQKLESISDMKAFVEN- 317

  Fly   355 LPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKPSAYIEDLIACRVELNR 419
            .||........|:|..:.|.|..          |.:|::.|..:::::..|...|....:..|.|
Zfish   318 YPQFKKMSGTVSKHVTVVGELSR----------LVSERQLMEVSEVEQELACQNDHSNAQQMLRR 372

  Fly   420 VL-----------RLICM-----QCHAAS---GFKEKL----LNHYKRELVHV---YGLEVLLTI 458
            :|           ||:.:     :.|::|   ...|:|    ::...|::||.   ||.:     
Zfish   373 LLQSPRLSEIDAVRLVMLYALRYEKHSSSILPSLMEELNRKGVSERHRKMVHAVVEYGGK----- 432

  Fly   459 SNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISYVHSFYAPLTARIVEHSLKPLGWQ 523
             .:..|.|:   |.:.|.|:.::..            |.:..|.:.|       .:|  :||...
Zfish   433 -RIRGSDLI---TPTDAVSITKQFF------------KGLKGVENVY-------TQH--QPLLHD 472

  Fly   524 TLKSQINNLPGPTFEDFQAQLVGIGGRHTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLA 588
            ||...|..    ..:|.|...:|           ..||.:.|:.::|..:||.|:.| |...:..
Zfish   473 TLDQLIKG----RLKDSQFPYLG-----------PSSLRDRPQDIIVFIIGGATYEE-ALTVYNL 521

  Fly   589 AQEDNNVEFLIATTKVVNKHSFLDSLMSS----------XGRRLSR 624
            .:....|..::..|.:.|..|||:.:|.|           ||::||
Zfish   522 NRTMPGVRIVLGGTHIHNTKSFLEEVMLSVGSGGDRSQIGGRQMSR 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 121/601 (20%)
vps45NP_001243585.1 Sec1 23..539 CDD:279352 120/599 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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