DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and stxbp1b

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001082845.1 Gene:stxbp1b / 557717 ZFINID:ZDB-GENE-060531-166 Length:605 Species:Danio rerio


Alignment Length:659 Identity:132/659 - (20%)
Similarity:247/659 - (37%) Gaps:139/659 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLALKPELHLPREVANV 80
            ::.|....::::::.:....||:|:|:..:..:....:.......||.::....:...|......
Zfish     9 IVGEKIMNDVIRKVKKKGEWKVLVVDKLSMRMVSSCCKMTDIMSEGITIVEDITKKREPLPTMEA 73

  Fly    81 VYVMRPRVALMEQLAAHVKAGGRAAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWNY 145
            ::::.|....:|.|....: ..|....|..|:.|.........:.|..|....|...:.|:...:
Zfish    74 IFLITPSDESVEGLINDFR-DPRNPIYRGAHVFFTDAIPDSLFNLLSKSRASKSIKTLTEIHIAF 137

  Fly   146 LPLDVDLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRI----------PKIYGKGEF- 199
            ||.:..:.|::..:||:|.      .|.::|.|....|:||..:|          |.:..:||: 
Zfish   138 LPYESQVFSVDKSDAFQDF------YSPFKADVKNQVLERLAEQIATLCATLKEYPAVRYRGEYK 196

  Fly   200 -----AHRVWEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDEFYGIRQ 259
                 |..:.:.......|:.||..|......||::|||..|.:|||..:||::.:..:.     
Zfish   197 DNAVLAQMLQDKLDGYKADDPTLGEGPDKARSQLLILDRGFDPVSPLLHELTFQAMAYDL----- 256

  Fly   260 NKLTLPAEN----FPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLHSGEQLYAELRNKHFNEV 320
                ||.||    :.:.|                  :|||..|.:||...:.|:..||:||..||
Zfish   257 ----LPIENDVYMYETSG------------------MGDTRMKEVLLDEDDDLWMTLRHKHIAEV 299

  Fly   321 TKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQKKATSEHTAIAGLLHEQVNAV--- 382
            :..:.:..::........:.:|:..:..|.:...:||...:....|.|..:|....:|....   
Zfish   300 STAVTKSLKDFSASKKMNTGEKTTMKELSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQGTVDK 364

  Fly   383 --RFADDLA----AEQEFMVCADIDKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKE----K 437
              |...|||    ||.|.:.    |...|.:..|:...|.:...:|:|.:.....:|..|    |
Zfish   365 LCRVEQDLAMGTDAEGEKIK----DPMRAIVPILLDATVTIMDKIRIILLYIFLKNGVSEENLCK 425

  Fly   438 LLNHYK---------RELVHVYGLEVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLT------- 486
            ||.|.:         ..:.|: |:.::...:...|.     :...|...:..:|..|:       
Zfish   426 LLQHAQIPPEDSDIISNMAHM-GVPIISEQATTRKG-----KKSDRKERISEQTYQLSRWTPLVK 484

  Fly   487 --VDDNVE--IEPKDISYVHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGI 547
              ::|.:|  ::||...|:.:                   :|:.|:........:          
Zfish   485 DIMEDAIEDKLDPKQYPYIST-------------------RTVSSKTTTATSARY---------- 520

  Fly   548 GGRHTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTKVVN-----K 607
            |..|  ...|.|.:.|.||:: |..|||.|::|:..: :...|.:...|.||.:|..:.     |
Zfish   521 GNWH--KNKSPGEIRNGPRII-VFIVGGVTYSEMRCV-YEVTQANGKWEALIGSTHTITPVKYLK 581

  Fly   608 H----SFLD 612
            |    .|||
Zfish   582 HLQHADFLD 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 126/622 (20%)
stxbp1bNP_001082845.1 Sec1 29..576 CDD:279352 126/623 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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