DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and vps33a

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:XP_012818531.1 Gene:vps33a / 549689 XenbaseID:XB-GENE-978483 Length:614 Species:Xenopus tropicalis


Alignment Length:611 Identity:269/611 - (44%)
Similarity:382/611 - (62%) Gaps:32/611 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGI-RLLALKPELHLP 74
            ||||.:|:||...||.:.||:..|||.||.||.:.||..|:.:..|..:..: ::..||......
 Frog    22 RVNLNILREAMRMELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKSGPLPS 86

  Fly    75 REVANVVYVMRPRVALMEQLAAHVKAGGRAA-AGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNI 138
            .:|.|:::.:|||:.||:.:|.:::...|.. ..|.::|||.||||.||..:|:..||||||.:.
 Frog    87 SDVKNIIFFVRPRLELMDIIADNIQREERGRFPQRDFYILFVPRRSILCEQRLKDLGVLGSFMHR 151

  Fly   139 EELAWNYLPLDVDLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFAHRV 203
            :|...|.:|.|.||:|||..|||::..::.|.:||||||.||..||.|||.||:|.||||.|..|
 Frog   152 DEYRLNLIPFDGDLLSMESENAFKECYLENDQTSLYQAAKGLTTLQSLYGTIPQICGKGECARHV 216

  Fly   204 WEHAKQLGRDERTL---YNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLP 265
               |..:.|.:|.|   .|....|.|.|:||||::|||:||||||||||||||.|||:.:.:.||
 Frog   217 ---ANMMIRMKRELGGSQNQITPVFDTLLLLDRNVDLLTPLATQLTYEGLIDEVYGIQNSHVKLP 278

  Fly   266 AENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLHSGEQLYAELRNKHFNEVTKLLARKARE 330
            .|.|     .|...|.|     .:.|  .||.|.:||:|.|:||||:|:|:||.|..:|::||:.
 Frog   279 PEKF-----APKKQGEG-----GKDL--PTEPKKLLLNSAEELYAEIRDKNFNAVGSVLSKKAKI 331

  Fly   331 IHVQMHATSQDKSVQEIKSFVENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFM 395
            |..........|:|.|||.||.. ||.:.|:|.:.:.||:||.|:.|...:..|.|:|..|||||
 Frog   332 ISAAFEGRHNAKTVGEIKQFVSQ-LPHMQAEKASLANHTSIAELIKEITTSEAFFDNLTVEQEFM 395

  Fly   396 VCADIDKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVYGLEVLLTISN 460
            ...|.||.:.||||.||.:..:.::|||:|:|....:|.|:|:|::||||::..||.|.:||:.|
 Frog   396 SGFDTDKVNPYIEDCIAKKDPIIKILRLVCLQSVCNTGLKQKVLDYYKREILQTYGYEHILTLHN 460

  Fly   461 LEKSGLLHLQTESR-AYSVLRKTLHLTVDDNVEIEPKDISYVHSFYAPLTARIVEHSLKPLGWQT 524
            |||:|||.||..|| :|..:||||.|.:||..|..|.|||||:|.||||:.|:.:..::| ||::
 Frog   461 LEKAGLLKLQASSRNSYPTIRKTLRLWMDDVNEQNPNDISYVYSGYAPLSVRLAQILVRP-GWRS 524

  Fly   525 LKSQINNLPGPTFEDFQAQLVGIGGRHTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAA 589
            ::..:..||||.||:.|:...|:     :....:|.    .:|:||.|:||.|||||||||||:.
 Frog   525 IEEVLKILPGPQFEERQSLPPGL-----LKKRQQGE----NKVILVFFLGGVTFAEIAALRFLSQ 580

  Fly   590 QEDNNVEFLIATTKVVNKHSFLDSLM 615
            .||...|::|||||:::..:::.|||
 Frog   581 MEDGGTEYIIATTKLISGTTWIKSLM 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 253/575 (44%)
vps33aXP_012818531.1 Sec1 47..598 CDD:366407 253/576 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 425 1.000 Domainoid score I615
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H11294
Inparanoid 1 1.050 449 1.000 Inparanoid score I1580
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D406738at2759
OrthoFinder 1 1.000 - - FOG0002117
OrthoInspector 1 1.000 - - oto102992
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1571
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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