DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and stxbp3

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001015972.1 Gene:stxbp3 / 548726 XenbaseID:XB-GENE-963836 Length:589 Species:Xenopus tropicalis


Alignment Length:660 Identity:125/660 - (18%)
Similarity:250/660 - (37%) Gaps:153/660 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 QRVNLQLLQEAACRELLQQLDRIEGS--KVIVLDETMIGPLDLVTRPKLFADRGIRLLALKPELH 72
            |::..::|.:  ||         :|.  |:::||......|....:.......||.::....:..
 Frog    15 QKIKTEVLDD--CR---------KGDEWKILLLDHFTTKLLTSCCKMTDLLQEGITVVEDLFKKR 68

  Fly    73 LPREVANVVYVMRPRVALMEQLA--AHVKAGGRAAAGRQY------HILFAPRRSC------LCV 123
            .|.|....:|.:.|....::.|.  .:.|:..:..|...|      ..||...:||      .| 
 Frog    69 QPVEHMKAIYFISPNEKSVDCLVNDFNSKSASKYKAAYVYFSDVCPDSLFNKLKSCHPKTIKRC- 132

  Fly   124 SQLEVSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFR-----DVSVDGDTSSLYQAAVGLVQL 183
                           :|::.::.|.:..:..:.:|.||.     |.:||.:| ::...|..:|.|
 Frog   133 ---------------KEISISFFPKESQVFLLNVPKAFHLLYSPDKAVDKET-AIQTIAQQIVTL 181

  Fly   184 QRLYGRIPKI-YGK------GEFAHRVWEHAKQLGR-DERTLYNGDKGVVDQLILLDRSIDLLSP 240
            .......|.: |.|      .|.|:.|.|...|..: ||:..:...  ...||:::||..|..|.
 Frog   182 CATLEENPGVRYKKEPLDNAEELANLVEEQLVQYYKMDEKDQFKAK--TQSQLLIVDRGFDPFST 244

  Fly   241 LATQLTYEGLIDEFYGIRQNKLTLPAEN----FPSDGALPGGGGSGPRVEESQSLLGDTEKKTIL 301
            :..:||::.::.:.         ||.||    :.::.||                   .:.|...
 Frog   245 ILHELTFQAMVYDL---------LPIENDIYKYRTESAL-------------------AKDKEAR 281

  Fly   302 LHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQKKATS 366
            |...::|:.::|:||...|.:.:.:..:||......|..:.|:.::...::. :|.:..|....:
 Frog   282 LDESDELWVKIRHKHIANVLEEIPKLVKEISSSKKETEGNISISKLADIMKK-MPHIRKQIGKQT 345

  Fly   367 EHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADI------DKPSAYIEDLIACRVELNRVLRLIC 425
            .|.::|....::... |......|||:..:.:|.      |.....:..||:..::....:|.|.
 Frog   346 LHLSLAEDCMQKFRG-RLEKLCKAEQDLALGSDAEGQKVKDHMRVLLPILISNDLDNYDKIRAIL 409

  Fly   426 MQCHAASGFKEKLLNHYKRELVHVYGLEVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDN 490
            :.....:|..::             .|:.|:|.:.:|..|           .||:...:|    .
 Frog   410 LYIFVENGTSQE-------------NLDRLITHAKIEGGG-----------DVLKNWKYL----G 446

  Fly   491 VEIEPK---------DISYVHSF----YAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQA 542
            |.|.||         |.|...:|    :.|:...::|        .|:::::::...|...:..|
 Frog   447 VPIVPKSTQRRPARRDRSKEETFQLSRWTPIIKDVIE--------DTMENKLDSKEWPYCSECPA 503

  Fly   543 QLVGIG---GRHTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTKV 604
            ...|.|   .|....|:|.....||.|:: :..:||.|::||.. .:..:|.:..|:.:|.:|.:
 Frog   504 AWNGSGAVSARQKHNTISRDERKNVSRLI-IFVIGGITYSEIRC-AYEVSQANKFVQVIIGSTHI 566

  Fly   605 VNKHSFLDSL 614
            :...:.||.:
 Frog   567 ITPKTMLDDV 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 118/622 (19%)
stxbp3NP_001015972.1 Sec1 32..569 CDD:366407 118/623 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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