DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and Vps45

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_649909.1 Gene:Vps45 / 41153 FlyBaseID:FBgn0261049 Length:574 Species:Drosophila melanogaster


Alignment Length:657 Identity:136/657 - (20%)
Similarity:251/657 - (38%) Gaps:163/657 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPL-------DLVTRPKLFADR------GIRLL 65
            ::|..|..|.|      ...|.|:|:||:.....:       |::.|.....:|      ..||.
  Fly     7 IKLYIEKMCSE------SGPGMKIILLDKETTSIISMAFSQSDMLQREVYLFERLDSGRSNERLK 65

  Fly    66 ALKPELHLPREVANVVYVMRPRVALMEQLAAHVKAGGRAAAGRQYHILFA---PRRSCLCVSQLE 127
            .||           .:..:||....::.||..::....:|    |:|.|:   ||.....:::.:
  Fly    66 YLK-----------CIVFIRPTKQNIQLLANELRNPKYSA----YYIYFSNIIPRTDIKYLAECD 115

  Fly   128 VSGVLGSFGNIEELAWNYLPLDVDLVSMEMPNAFRDV---------SVDGDTSSL---------- 173
            .|   .|...::||..:||.::.:|.|:.:||...::         |:.|.|:.|          
  Fly   116 ES---ESVREVKELYADYLCVNPNLFSLGIPNCMANLNWLPDALNRSMQGITAVLLSLKLNPVIR 177

  Fly   174 YQAAVGLVQL--QRLYGRIPKIYGKGEFAHRVWEHAKQLGRDERTLY----NGDKGVVDQLILLD 232
            |:|.....||  :.:|.:|.|                     |.:|:    |.|......|::||
  Fly   178 YRAGSQAAQLLAKLIYEQITK---------------------ESSLFDFRSNMDGAAPPLLLVLD 221

  Fly   233 RSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLP-AENFPSDGALPGGGGSGPRVEESQSLLGDTE 296
            |..|.::||..|.||:.::.|...|:.|:|.|. ..|.|.|                       .
  Fly   222 RRDDPVTPLLHQWTYQAMVHELLHIKNNRLDLSNCPNVPKD-----------------------F 263

  Fly   297 KKTILLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQ 361
            |:.:|....:..|......::.|:...:.:...|...:.:...:.:|:.::|:|:|: .||....
  Fly   264 KELVLSGDQDDFYGNNMYANYGEIGSTIKQLMEEFQRKANDHKKVESIADMKNFIES-YPQFKKM 327

  Fly   362 KKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKPSAYIEDLIAC-RVELNRVLRLIC 425
            .....:|..:.|.|....|.....:....|||....|:.......|:.|||. ||.::..|:|:.
  Fly   328 SGTVQKHLCVIGELSALSNKRNLFEVSELEQEIACKAEHSAQLQRIKKLIADERVSIDDALKLVA 392

  Fly   426 M-----QCHA---ASGFKEKLLNHYKRELVHVYGLEVLLTISNLEKSGLLHLQTESRAYSVLRKT 482
            :     :.||   .||    ||     :::...|....:..|.:|.:| .|:: :...::::|.|
  Fly   393 LYALRYERHANCDTSG----LL-----QIIKTRGGRAAIVPSLIEYAG-THVR-QGDLFNMVRIT 446

  Fly   483 LHLTVDDNVEIEPKDISYVHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGI 547
            ..:.:..|:....|.:..|.:.:.||....:|...|  |.:.         .|.|....::||  
  Fly   447 DAVKLTRNLIKGLKGVENVFTQHTPLLKETLEDVFK--GREL---------DPLFPAINSELV-- 498

  Fly   548 GGRHTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEF--LIATTKVVNKHSF 610
                        .....|:.|:|..:||.|:.|.     ||..:.||..:  ::..|.:.|..||
  Fly   499 ------------PFRRPPQEVVVFIIGGATYEEA-----LAVHQLNNAGYKVILGGTTIHNSQSF 546

  Fly   611 LDSLMSS 617
            :..::::
  Fly   547 IQEVVAA 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 128/622 (21%)
Vps45NP_649909.1 Sec1 23..543 CDD:279352 128/623 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464245
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11679
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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