DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and Slh

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001137769.2 Gene:Slh / 33434 FlyBaseID:FBgn0264978 Length:639 Species:Drosophila melanogaster


Alignment Length:690 Identity:133/690 - (19%)
Similarity:246/690 - (35%) Gaps:198/690 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 KVIVLD---ETMIGPLDLVTRPKLFADRGIRLLALKPELHLPRE-VANV--VYVMRPRVALMEQL 94
            |:::.|   :.:|.|:..:   |...:.|:   .|..:||..|: :.:|  :|...|....::::
  Fly    33 KILIYDRVGQDIISPIISI---KELRELGV---TLHVQLHSDRDSIPDVPAIYFCLPTDENLDRI 91

  Fly    95 AAHVKAGGRAAAGRQYHILF-APRRSCLCVSQLE-------VSGVLGSFGNIEELAWNYLPLDVD 151
            .....:|    ....||:.| ||    :..|::|       .:|.:.:...:.:...|::.|:.|
  Fly    92 QQDFSSG----LYDVYHLNFLAP----ITRSKIENLAAAALHAGCVANIHRVYDQYVNFISLEDD 148

  Fly   152 LVSM--------------------EMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKI--- 193
            ...:                    |...|..|..||    ||:...|.|       |.:|.|   
  Fly   149 FFILKHQQSDQLSYYAINRANTRDEEMEALMDSIVD----SLFALFVTL-------GNVPIIRCP 202

  Fly   194 -YGKGEFAHR---------VWEHAKQLGRDERTLYNGDKGVVD----QLILLDRSIDLLSPLATQ 244
             ....|...|         :|:....|...:.|...|  ||..    .|:||||::||.:||...
  Fly   203 RNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGG--GVFSFQRPVLLLLDRNMDLATPLHHT 265

  Fly   245 LTYEGLIDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLHSG---- 305
            .:|:.|:.:...:..|.:      :..|.....|....|:..:.     |...:..:.|.|    
  Fly   266 WSYQALVHDVLDLGLNLV------YVEDETASAGARKKPKACDL-----DRNDRFWMTHKGSPFP 319

  Fly   306 ---EQLYAEL---RNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQKKA 364
               |.:..||   ||.. .|:.:|......|....:..:..:.:...:.:.| |.|||||.:|:.
  Fly   320 TVAEAIQEELESYRNSE-EEIKRLKTSMGIEGESDIAFSLVNDTTARLTNAV-NSLPQLMEKKRL 382

  Fly   365 TSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDKPSAYIEDLI--------ACRVELNRVL 421
            ...||.||..:...:.|.|.......|::.|....:|:|   :.||:        ..::.| .::
  Fly   383 IDMHTKIATAILNFIKARRLDSFFEIEEKVMSKQTLDRP---LLDLLRDGEFGQAEDKLRL-YII 443

  Fly   422 RLICMQCHAASGFKEKLLNHYKRELVHVYGLEVLLTISNLEK-SGLLHLQTESRAYSVLRKTLH- 484
            ..||.| ......:|:|     :|.:...|.: |..::.::: .|::     :|:.|:.:.|.: 
  Fly   444 YFICAQ-QLPESEQERL-----KEALQAAGCD-LTALAYVQRWKGIM-----NRSPSISQATQYE 496

  Fly   485 ----LTVDDNVEIEPKDISYVHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLV 545
                .||....::..:..|:|..                 |.:.|..:.:|||            
  Fly   497 GGGTKTVSMFTKLVSQGSSFVME-----------------GVKNLVVKRHNLP------------ 532

  Fly   546 GIGGRHTVTTVSE------------------------GSLLNVPRV----VLVCFVGGCTFAEIA 582
                   ||.::|                        |.:|...|.    .:|..|||..:.|..
  Fly   533 -------VTKITEQVMECRSNAETDDYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQ 590

  Fly   583 AL-RFLAAQEDNNVE--FLIATTKVVNKHSFLDSLMSSXG 619
            .| .|:..::.:||:  .:...:.:.|...||..|.:. |
  Fly   591 NLVDFIKQKQTSNVQRRIIYGASTLTNARQFLKELSALGG 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 128/675 (19%)
SlhNP_001137769.2 Sec1 1..630 CDD:301618 132/688 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464249
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11679
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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