DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and scfd1

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_878281.1 Gene:scfd1 / 317732 ZFINID:ZDB-GENE-030116-3 Length:632 Species:Danio rerio


Alignment Length:696 Identity:141/696 - (20%)
Similarity:254/696 - (36%) Gaps:207/696 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 KVIVLD---ETMIGPLDLVTRPKLFADRGIRLLALKPELHLPRE-VANV--VYVMRPRVALMEQL 94
            ||::.|   :.:|.||..|   |...|.||.|..|   ||..|: :.:|  :|.:.|....::::
Zfish    34 KVLIYDRFGQDIISPLLSV---KELRDMGITLHLL---LHSDRDPIPDVPAIYFIMPTEENIDRI 92

  Fly    95 AAHVKAGGRAAAGRQYHILFAPRRSCLCVSQLE-------VSGVLGSFGNIEELAWNYLPLDVDL 152
            ...:    |......|::.|.   |.:..|:||       .:..:.....:.:...|::.|:.|:
Zfish    93 CQDL----RNQLYESYYLNFI---SAISRSKLEDIASAALAANAVNQVTKVFDQYLNFITLEDDM 150

  Fly   153 ----------VSMEMPNA--FRDVSVDG--DT--SSLYQAAVGLVQLQRLYGRIPKI-YGKGEFA 200
                      :|....|.  ..|..::|  ||  .||:...|.|       |.:|.| ..:|..|
Zfish   151 FILCNQNKEHISYHAINKPDIMDTDMEGIMDTIVDSLFCFFVTL-------GAVPIIRCPRGNAA 208

  Fly   201 HRVWEHAKQLG-------RDER-TLYNGDKGVVDQ-------LILLDRSIDLLSPLATQLTYEGL 250
            ..|   |.:|.       ||.| :|:.||.....|       .:|.||::||.:||....||:.|
Zfish   209 EMV---AVKLDKKLRENLRDARNSLFTGDTMGTGQFSFQRPLFVLADRNLDLATPLHHTWTYQAL 270

  Fly   251 IDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLHSGEQLYAELRNK 315
            |.:......|::::.    .|.|:.....|:.|:.:         .||:..|.:.::.:.:.:..
Zfish   271 IHDVLDFHLNRVSVD----ESHGSEASPAGARPKKK---------NKKSYDLTAADKFWQKHKGS 322

  Fly   316 HFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQKKATSEHTAIAGLLHEQVN 380
            .|.||.:.:..:.....      :|:..|:.:||                     |.||..|...
Zfish   323 PFPEVAEAVQEELDTYR------AQEDEVKRLKS---------------------IMGLEGEDDG 360

  Fly   381 AVRFADDLAAEQEFMVCADIDKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRE 445
            |:....|..|:               :...::...||....|||.:..:.|:.    :|:|.|..
Zfish   361 AISMLSDNTAK---------------LTSAVSSLPELLEKKRLIDLHTNVATA----VLDHIKSR 406

  Fly   446 LVHVY--GLEVLLTISNLEKSGLLHLQTESRA------------YSV----------LRKTLHLT 486
            .:.||  ..|.|::.|.|:|| ||.:.::..|            |.:          |.:.....
Zfish   407 KLDVYFEYEEKLMSKSTLDKS-LLDIISDPDAGTAEDKMRLFLIYYITSQQPPSEADLEQYKKAM 470

  Fly   487 VDDNVEIEPKDISYVHSF-----YAPLTARIVEHSLKPLG-------------WQTLKSQI---N 530
            ||...::.|  ::|:..:     .|...|......:||:|             .:.:|:.:   :
Zfish   471 VDAGCDLSP--LNYIKQWKAFTKMAATPANYGSSGVKPMGLFSRVMNTGSQFVMEGVKNLVLKQH 533

  Fly   531 NLP-------------GPTFEDFQAQLVGIGGRHTVTTVSEGSLLNVPR------VVLVCFVGGC 576
            |||             .|..:|:         |:....:..||..::||      ..:|..|||.
Zfish   534 NLPVTRILDNLMEMKSNPETDDY---------RYFDPKMLRGSESSIPRNKNPFQEAIVFVVGGG 589

  Fly   577 TFAEIAAL-RFLAAQEDNNVEFLIATTKVVNKHSFLDSLMSSXGRR 621
            .:.|...| .:...::...:  |...:::.|...|:..| |. |::
Zfish   590 NYIEYQNLVDYTKTRQGKRI--LYGCSELFNAAQFIKQL-SQLGQK 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 136/679 (20%)
scfd1NP_878281.1 Sec1 34..619 CDD:279352 136/680 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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