DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and Stxbp1

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:XP_006234001.1 Gene:Stxbp1 / 25558 RGDID:3785 Length:603 Species:Rattus norvegicus


Alignment Length:657 Identity:129/657 - (19%)
Similarity:240/657 - (36%) Gaps:125/657 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EAACRELLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLALKPELHLPREVANVVYV 83
            |....::::::.:....||:|:|:..:..|....:.......||.::....:...|......||:
  Rat    12 EKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYL 76

  Fly    84 MRPRVALMEQLAAHVK----AGGRAAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWN 144
            :.|....:..|.:..|    |..|||     |:.|.........::|..|........:.|:...
  Rat    77 ITPSEKSVHSLISDFKDPPTAKYRAA-----HVFFTDSCPDALFNELVKSRAAKVIKTLTEINIA 136

  Fly   145 YLPLDVDLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRI----------PKIYGKGEF 199
            :||.:..:.|::..::|:..      .|.::|.:....|:||..:|          |.:..:||:
  Rat   137 FLPYESQVYSLDSADSFQSF------YSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEY 195

  Fly   200 ------AHRVWEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDEFYGIR 258
                  |..:.:.......|:.|:..|......||::|||..|..||:..:||::.:..:.    
  Rat   196 KDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDL---- 256

  Fly   259 QNKLTLPAEN----FPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLHSGEQLYAELRNKHFNE 319
                 ||.||    :.:.|                  :|:...|.:||...:.|:..||:||..|
  Rat   257 -----LPIENDVYKYETSG------------------IGEARVKEVLLDEDDDLWIALRHKHIAE 298

  Fly   320 VTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQ--KKATSEHTAIAGLLHEQVNA- 381
            |::.:.|..::........:.:|:.....|.:...:||...:  |.:|..|.|...:.|.|... 
  Rat   299 VSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVD 363

  Fly   382 --VRFADDLA----AEQEFMVCADIDKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLN 440
              .|...|||    ||.|.:.    |...|.:..|:...|.....:|:|.:.....:|..|:.||
  Rat   364 KLCRVEQDLAMGTDAEGEKIK----DPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLN 424

  Fly   441 HYKRELVHVYGLEVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTV----DDNVEIEPK----- 496
                :|:.                   |.|.......::....||.|    |..:....|     
  Rat   425 ----KLIQ-------------------HAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE 466

  Fly   497 ---DISYVHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGP-----TFEDFQAQLVGIGGRHTV 553
               :.:|..|.:.|:...|:|        .|::.:::....|     :...|....|.....|..
  Rat   467 RISEQTYQLSRWTPIIKDIME--------DTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWH 523

  Fly   554 TTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTKVVNKHSFLDSLMSSX 618
            ...:.|...:.||:: :..:||.:..|:.. .:...|.:...|.||.:|.::....||..|....
  Rat   524 KNKAPGEYRSGPRLI-IFILGGVSLNEMRC-AYEVTQANGKWEVLIGSTHILTPTKFLMDLRHPD 586

  Fly   619 GRRLSRL 625
            .|..||:
  Rat   587 FRESSRV 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 122/619 (20%)
Stxbp1XP_006234001.1 Sec1 29..575 CDD:395791 122/620 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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