DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment car and Stxbp3

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_035634.1 Gene:Stxbp3 / 20912 MGIID:107362 Length:592 Species:Mus musculus


Alignment Length:640 Identity:117/640 - (18%)
Similarity:240/640 - (37%) Gaps:145/640 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 RIEGS-KVIVLDETMIGPLDLVTRPKLFADRGIRLLALKPELHLPREVANVVYVMRPRVALMEQL 94
            |.||. |:::|||.....|....:.....:.||.::....:...|......:|.:.|....::..
Mouse    27 RKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCF 91

  Fly    95 AAHV--KAGGRAAAGRQYHILFAP-------RRSCLCVSQLEVSGVLGSFGNIEELAWNYLPLDV 150
            ....  |:..:..|...|...|.|       :.||           ..|....:|:..:::|.:.
Mouse    92 LRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKASC-----------SKSIRRCKEINISFIPQES 145

  Fly   151 DLVSMEMPNAF-RDVSVDGDTSSLYQAAVGLV--QLQRLYGRIPKIYGKGEFAHRVWEHAKQLGR 212
            .:.::::|:|| ...|.|...:|..:..:..:  |:..:...:.:..|. .:..:..::|.:|.:
Mouse   146 QVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGV-RYKSKPLDNASKLAQ 209

  Fly   213 ------------DERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLP 265
                        ||:.|..|.  ...||:::||..|.:|.:..:||::.:..:.         ||
Mouse   210 LVEKKLEDYYKIDEKGLIKGK--TQSQLLIIDRGFDPVSTVLHELTFQAMAYDL---------LP 263

  Fly   266 AEN----FPSDGALPGGGGSGPRVEESQSLLGDTEKKTILLHSGEQLYAELRNKHFNEVTKLLAR 326
            .||    :.:||                      ::|..:|...:.|:..:|::|...|.:.:.:
Mouse   264 IENDTYKYKTDG----------------------KEKEAVLEEDDDLWVRVRHRHIAVVLEEIPK 306

  Fly   327 KAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQ----KKATSEHTAIAGLLHEQVNAVRFADD 387
            ..:||.....||....|:        :.|.|||.:    :|..|:......|..:.:|..:...:
Mouse   307 LMKEISSTKKATEGKTSL--------SALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLNIE 363

  Fly   388 LAAEQEFMVCADIDKPSAYIED--LIACRVELNRVLRLICMQCHAASGFKEKLLNH-----YKRE 445
            ...:.|..:....|.....::|  |:...|.||:                    ||     .:..
Mouse   364 KLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNK--------------------NHDNCDKIRAV 408

  Fly   446 LVHVYGLEVLLTISNLEKSGLLH---LQTESRAYSVLRKTLHL---TVDDNVEIEP--KDISYVH 502
            |::::|:.. .|..||::  |:|   ::.:|   .::|...||   .|..:.:.:|  ||.|...
Mouse   409 LLYIFGING-TTEENLDR--LIHNVKIEDDS---DMIRNWSHLGVPIVPPSQQAKPLRKDRSAEE 467

  Fly   503 SF----YAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGG----RHTVTTVSEG 559
            :|    :.|....|:|        ..:.:::::...|......|...|.|.    :...|...|.
Mouse   468 TFQLSRWTPFIKDIME--------DAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLEL 524

  Fly   560 SLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTKVVNKHSFLDSL 614
            ...|..|:: :..:||.|::|:.. .:..:|...:.|.:|.:|.::.....||.:
Mouse   525 DRKNGSRLI-IFVIGGITYSEMRC-AYEVSQAHKSCEVIIGSTHILTPRKLLDDI 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 112/624 (18%)
Stxbp3NP_035634.1 Mediates interaction with DOC2B. /evidence=ECO:0000269|PubMed:17548353 1..255 45/241 (19%)
Sec1 33..570 CDD:395791 112/625 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.