DRSC/TRiP Functional Genomics Resources

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Protein Alignment car and vps-33.1

DIOPT Version :9

Sequence 1:NP_001259707.1 Gene:car / 32947 FlyBaseID:FBgn0000257 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_498920.2 Gene:vps-33.1 / 176221 WormBaseID:WBGene00015130 Length:603 Species:Caenorhabditis elegans


Alignment Length:641 Identity:161/641 - (25%)
Similarity:283/641 - (44%) Gaps:124/641 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LLQQLDRIEGSKVIVLDETMIGPLDLVTRPKLFADRGIRLLAL-------KPELHLPREVANVVY 82
            |...||.::|:|.||.|...    .::.|..|||  |..:||.       ..|........:||:
 Worm    33 LFSVLDSLDGNKTIVWDRDR----SVMHRVNLFA--GASVLAAHGVVANHSIETKKSASTPHVVF 91

  Fly    83 VMRPRVALMEQLAAHVKAGGRAAAGRQYHILFAPRRSCLCVSQLEVSGVLGSF----GNIEELAW 143
            .:.|.:..::.|..::. ..|..:...|.:.|.|....:....|:.... |.:    .:::|:..
 Worm    92 FLAPTMVSLDLLCDYID-NVRNDSKILYQVFFIPEAWFVVRESLKTRAE-GKYWERLESVKEIPL 154

  Fly   144 NYLPLDVDLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQL-QRLYGRIP-------KIYGKGEFA 200
            .:||.|.:.:|:..|.....:.::||.:.|::.||.|.|| ....||..       .||.||::|
 Worm   155 CWLPRDGECLSLSSPQIAARLLINGDWTHLHKCAVALNQLIDMCRGRSSSSNQRPMSIYAKGKWA 219

  Fly   201 HRVWEHAKQLGR-------DERTLYNGD--KGV--VDQLILLDRSIDLLSPLATQLTYEGLIDEF 254
            ..|   ||.:|:       |..| .|.|  :|:  :::::|:||.:|.|:|:.:|||:.||:||.
 Worm   220 SDV---AKMMGKIRNSAEADSMT-KNLDPIEGLLKINRIVLIDRWMDPLTPMLSQLTFYGLLDEI 280

  Fly   255 YGIRQ-NKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGD--TEKKTILLHSGEQLYAELRNKH 316
            |||.. |.:.:|...|.::..                  ||  .||:..|:   :::|..|::.|
 Worm   281 YGIGMVNSVKVPEMEFKNEKD------------------GDPFQEKEVYLI---DEVYHRLKHSH 324

  Fly   317 FN----EVTKLLARKAREIHVQMHATSQDKSVQEIKSFVENLLPQLMAQKKATSEHTAIAGLLHE 377
            .|    |.:|:||    ||...........||.|....|:. :|:::.:||....|..:|.::..
 Worm   325 INAVSIEASKVLA----EIRDDEQFDRDKMSVAEYSVLVKK-MPKIINRKKMIEVHMRLAEMIQS 384

  Fly   378 QVNAVRFADDLAAEQEFMVCADIDKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHY 442
            .|.. :.:|.:..|::.:..:|.||....|||||.....||.|||||.:......|.|..:|.||
 Worm   385 HVYC-KQSDSIKLERDLLEYSDSDKAIPLIEDLIFDASPLNAVLRLISVHSLTCGGLKPSVLQHY 448

  Fly   443 KRELVHVYGLEVLLTISNLEKSGLLH-------LQTE--SRAYSVLRKTLHLTVDDNVEIEPKDI 498
            :|.:...||...|..:..::|.||:.       :|.|  ...:..::|...:..::..|.:..|:
 Worm   449 RRIVNQSYGSSALNKVLKMQKMGLIREKGGGGKMQCEYAQMMFQQMKKNHDMLPEEFSEAKLDDM 513

  Fly   499 SYVHSFYAPLTARIVEHS--LKPLGW-QTLKSQINNLPGPTFEDFQAQLVGIGGRHTVTTVSEGS 560
            :|.:|.::||..:::|..  :|.:|| :|:                     ||.:..:....:| 
 Worm   514 AYAYSGFSPLLCKMLEEGDRVKWVGWPKTV---------------------IGDKSDLIAERDG- 556

  Fly   561 LLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDN--NVEFLIATTKVVNKHSFLDSL 614
                 |...|..:||.|.:|:|.:|      :|  ||. ||.|:.::.....|:::
 Worm   557 -----RGTCVFVIGGLTRSELAIIR------ENLPNVA-LITTSALITGDKLLNNI 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
carNP_001259707.1 Sec1 36..606 CDD:279352 156/620 (25%)
vps-33.1NP_498920.2 Sec1 44..435 CDD:279352 113/429 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160155944
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5158
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53951
OrthoDB 1 1.010 - - D406738at2759
OrthoFinder 1 1.000 - - FOG0002117
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101460
Panther 1 1.100 - - LDO PTHR11679
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1650
SonicParanoid 1 1.000 - - X1571
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.790

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