DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CoRest and rcor3

DIOPT Version :9

Sequence 1:NP_001188671.1 Gene:CoRest / 32941 FlyBaseID:FBgn0261573 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_031757914.1 Gene:rcor3 / 779496 XenbaseID:XB-GENE-981586 Length:560 Species:Xenopus tropicalis


Alignment Length:632 Identity:199/632 - (31%)
Similarity:299/632 - (47%) Gaps:178/632 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 AGTPESSDDDNSTKRNGKSKAKQSEY-EEKIRVGRDYQAVCPPLVPEAERRPEQMNERALLVWSP 126
            |.:|.|:.:.:.::.:|.|  ...|: :..:|||.|:||..|...|.|.:..:: :...:|||||
 Frog    17 AKSPLSASNGHCSEESGGS--DDDEHGDVGMRVGADFQARIPEFDPGATKYTDK-DSGGMLVWSP 78

  Fly   127 TKEIPDLKLEEYISVAKEKYGYNGEQALGMLFWHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQ 191
            ...|.||||:|||::||||:|||.||||||||||||::|:::.||.||||||||||:||||||||
 Frog    79 HHNIADLKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQ 143

  Fly   192 AFQFHGKSFHRIRQMLPDKSIASLVKYYYSWKKTRHRSSAMDRQEKAIKAVVKDGSENGSEVGSN 256
            ||.|||||||||:||||||||||||||||||||||.|:|.||||.:.:.:....|.       |:
 Frog   144 AFSFHGKSFHRIQQMLPDKSIASLVKYYYSWKKTRSRTSLMDRQARKLASKTNPGQ-------SD 201

  Fly   257 EESDNDDKKGHGTNSTINTIDATTTSTNNSTTNSNTTTPANIIANTINSNHSSSNSGGGGNINNN 321
            ||.:..:.|                                                 .||    
 Frog   202 EEVEEANPK-------------------------------------------------DGN---- 213

  Fly   322 GEENIQAVGGSNTISNTSNNDMDAEQLSLFAGNAQIEEMMALGLAADRAIGANGGNNNNNGEMGG 386
                              ::|.|.::      .|:.|.|...|                      
 Frog   214 ------------------DSDYDPKK------EAKKEHMSDFG---------------------- 232

  Fly   387 DPGLMRRMVVGGFCKICNVVCHVLHDSPLGRMCK-----SCHTHWRRTGNRRPISGPEGNAPRRS 446
                             ..:|:.:.::  ||..|     ||         .:|:....|....:|
 Frog   233 -----------------TFLCNPMENN--GRCVKVTSSESC---------IQPVKVALGRREYQS 269

  Fly   447 ---THNCAATADRSKRKPPKGMYINHDDLTALASCGN-PSLYLAERERKLTALMAEIQKNRQVME 507
               .|:    :.|||.:|||||||:.:|:.|::...| .:..|.:.:.:|.:|..::|..:|:..
 Frog   270 LQHRHH----SQRSKCRPPKGMYISKEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQINS 330

  Fly   508 QLDKECETINVDDVLSKPAAANTESAQPRISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTE 572
            .|.::.|. .:::.  :|..:|     .:::|||..:|..:|:..:|:|||:|..||.|:..||.
 Frog   331 ALKQKLEG-GIEEF--RPPESN-----QKVNARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTV 387

  Fly   573 AHVRTFYLNNRRRYNLDQIVKEYEAGKSEESGAEEQTEPAVDAAAAG---AATASAPSAADSTSA 634
            ..|:.|::|.|||:||:::::|:||    |.|.:....   ||:|.|   ..|:..|| ..||..
 Frog   388 GQVKNFFVNYRRRFNLEEVLQEWEA----EQGTQASNG---DASALGDDTKNTSHVPS-GKSTDE 444

  Fly   635 ASAT--------ADRKQSTENSNNGVETMQESLPKKEDPKKPELAAA 673
            ...|        .||...|.:|...:.|...::.:.....:|.|.||
 Frog   445 EEETPPNQTAPHTDRSSPTRSSVPALATSVSTVNQPPPLLRPTLPAA 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CoRestNP_001188671.1 ELM2 92..144 CDD:279754 23/51 (45%)
SANT 179..225 CDD:197842 42/45 (93%)
SANT 180..224 CDD:304392 40/43 (93%)
SANT 540..582 CDD:238096 16/41 (39%)
rcor3XP_031757914.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 300 1.000 Inparanoid score I2645
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D287298at33208
OrthoFinder 1 1.000 - - FOG0001182
OrthoInspector 1 1.000 - - otm48495
Panther 1 1.100 - - LDO PTHR16089
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1336
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

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