DRSC/TRiP Functional Genomics Resources

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Protein Alignment CoRest and rcor1

DIOPT Version :9

Sequence 1:NP_001188671.1 Gene:CoRest / 32941 FlyBaseID:FBgn0261573 Length:824 Species:Drosophila melanogaster
Sequence 2:XP_012824008.1 Gene:rcor1 / 733956 XenbaseID:XB-GENE-5727159 Length:434 Species:Xenopus tropicalis


Alignment Length:596 Identity:178/596 - (29%)
Similarity:269/596 - (45%) Gaps:209/596 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VRNGRRSRGPSPNTHTTGGVTNSASLVGSGNNSGHSGNANANEKTTTAVPGAGTPESSDDDNSTK 76
            |...||.|..:.|:.:.|...|       |:||...|::::               ||||:    
 Frog    11 VSGKRRGRNNAANSKSLGTSVN-------GSNSWEEGSSSS---------------SSDDE---- 49

  Fly    77 RNGKSKAKQSEYEEKIRVGRDYQAVCPPLVPEAERRPEQMNERALLVWSPTKEIPDLKLEEYISV 141
            :.|..          :|||..:|||.|....|..:..::.....:|||||.:.:.:.||:|||||
 Frog    50 QGGGG----------MRVGLQFQAVVPEFDQEVAKTCQERENLGMLVWSPNQNLSEAKLDEYISV 104

  Fly   142 AKEKYGYNGEQALGMLFWHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQM 206
            ||||:|||.||||||||||||::|:::.||.||||||||||:||||||||||.||||:||||:||
 Frog   105 AKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQM 169

  Fly   207 LPDKSIASLVKYYYSWKKTRHRSSAMDRQEKAIKAVVKDGSENGSEVGSNEESDNDDKKGHGTNS 271
            |||||||||||:||||||||.::|.|||..:..|.                     :::|.|   
 Frog   170 LPDKSIASLVKFYYSWKKTRSKTSVMDRHARKQKR---------------------EREGSG--- 210

  Fly   272 TINTIDATTTSTNNSTTNSNTTTPANIIANTINSNHSSSNSGGGGNINNNGEENIQAVGGSNTIS 336
                                                                :.|:...|:|.: 
 Frog   211 ----------------------------------------------------DEIEEANGANPV- 222

  Fly   337 NTSNNDMDAEQLSLFAGNAQIEEMMALGLAADRAIGANGGNNNNNGEMGGDPGLMRRMVVGGFCK 401
                 |::.||                                        |...::.|      
 Frog   223 -----DIEIEQ----------------------------------------PKEAKKEV------ 236

  Fly   402 ICNVVCHVLHDSPLGRMCKSCHTHWRRTGNRRPISGPEGNAPRRSTHNCAATADRSKRKPPKGMY 466
                                          .:|.:.|.   .::..|...| .:|:||||||||:
 Frog   237 ------------------------------PKPDTSPH---IKKEKHPSQA-KNRAKRKPPKGMF 267

  Fly   467 INHDDLTALASCGN-PSLYLAERERKLTALMAEIQKNRQVMEQLDKECETINVDDVLSKPAAANT 530
            ::.:|:.|:::..| .:..|...:.:|.::..:||..:|....| ||.....:|:.       ..
 Frog   268 LSQEDVQAVSANANAATTVLRHLDMELVSIKRQIQNIKQTNSSL-KENLQGGIDEY-------RI 324

  Fly   531 ESAQPRISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFYLNNRRRYNLDQIVKEY 595
            :....:::|||..:|..:|:.|||:||::|..|:.|:..|:...|:.|::|.|||:|:||:::|:
 Frog   325 QEVSQKLNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDQVLQEW 389

  Fly   596 EA--GKSEESG 604
            ||  ||:||:|
 Frog   390 EAEHGKTEENG 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CoRestNP_001188671.1 ELM2 92..144 CDD:279754 21/51 (41%)
SANT 179..225 CDD:197842 40/45 (89%)
SANT 180..224 CDD:304392 38/43 (88%)
SANT 540..582 CDD:238096 15/41 (37%)
rcor1XP_012824008.1 ELM2 55..107 CDD:366648 21/51 (41%)
SANT 143..187 CDD:389774 38/43 (88%)
RSC8 <220..>368 CDD:227584 45/241 (19%)
Myb_DNA-binding 334..377 CDD:365977 16/42 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 51 1.000 Domainoid score I11393
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32246
Inparanoid 1 1.050 300 1.000 Inparanoid score I2645
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D287298at33208
OrthoFinder 1 1.000 - - FOG0001182
OrthoInspector 1 1.000 - - otm48495
Panther 1 1.100 - - O PTHR16089
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3377
SonicParanoid 1 1.000 - - X1336
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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