DRSC/TRiP Functional Genomics Resources

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Protein Alignment CoRest and Rcor3

DIOPT Version :9

Sequence 1:NP_001188671.1 Gene:CoRest / 32941 FlyBaseID:FBgn0261573 Length:824 Species:Drosophila melanogaster
Sequence 2:NP_001128457.1 Gene:Rcor3 / 684192 RGDID:1593864 Length:551 Species:Rattus norvegicus


Alignment Length:655 Identity:195/655 - (29%)
Similarity:289/655 - (44%) Gaps:206/655 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GRRSRGPSPNTHTTGGVTNSASLVGSGNNSGHSGNANANEKTTTAVPGAGTPESSDDDNSTKRNG 79
            |...:||.     ..|.:.||:  |...:....|.::||.....:.|.:|.  ||||::.     
  Rat     3 GMMEKGPE-----LLGKSRSAN--GGAKSPAGGGGSSANGGLHFSEPESGC--SSDDEHG----- 53

  Fly    80 KSKAKQSEYEEKIRVGRDYQAVCPPLVPEAERRPEQMNERALLVWSPTKEIPDLKLEEYISVAKE 144
                     :..:|||.:|||..|...|.|.:..::.| ..:|||||...|||.||:||:::|||
  Rat    54 ---------DVGMRVGAEYQARIPEFDPGATKYTDKDN-GGMLVWSPYHSIPDAKLDEYVAIAKE 108

  Fly   145 KYGYNGEQALGMLFWHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSFHRIRQMLPD 209
            |:|||.||||||||||||::|:::.||.||||||||||:||||||||||.|||||||||:|||||
  Rat   109 KHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPD 173

  Fly   210 KSIASLVKYYYSWKKTRHRSSAMDRQEKAIKAVVKDGSENGSEVGSNEESDNDDKKGHGTNSTIN 274
            |:|||||||||||||||.|:|.||||.:.:......|           :||:|.::.|       
  Rat   174 KTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQG-----------DSDDDVEEPH------- 220

  Fly   275 TIDATTTSTNNSTTNSNTTTPANIIANTINSNHSSSNSGGGGNINNNGEENIQAVGGSNTISNTS 339
                                       .::.|.|..:.........|.|:.:|          ||
  Rat   221 ---------------------------PMDGNDSDYDPKKEAKREGNSEQPVQ----------TS 248

  Fly   340 NNDMDAEQLSLFAGNAQIEEMMALGLAADRAIGANGGNNNNNGEMGGDPGLMRRMVVGGFCKICN 404
                     .:..|..:.:.:.                                           
  Rat   249 ---------KIGLGRREYQSLQ------------------------------------------- 261

  Fly   405 VVCHVLHDSPLGRMCKSCHTHWRRTGNRRPISGPEGNAPRRSTHNCAATADRSKRKPPKGMYINH 469
                              |.|                      |     :.|||.:||||||:..
  Rat   262 ------------------HRH----------------------H-----SQRSKCRPPKGMYLTQ 281

  Fly   470 DDLTALASCGN-PSLYLAERERKLTALMAEIQKNRQVMEQLDKECETINVDDVLSKPAAANTESA 533
            :|:.|::...| .:..|.:.:.:|.:|..::|..:||...|.::.|. .:::.  ||..:|    
  Rat   282 EDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEG-GIEEF--KPPESN---- 339

  Fly   534 QPRISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFYLNNRRRYNLDQIVKEYEAG 598
             .:|:|||..:|..:|:..:|:|||:|..||.|:..||...|:.|::|.|||:||:::::|:|| 
  Rat   340 -QKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEA- 402

  Fly   599 KSEESGAEEQTEPAVDAAAAGAATASAPSAADSTSAASATADRKQSTENSNNGVETMQESLPKKE 663
               |.|.:             |:.|...:..:.|.:||.....|.:.|..    |.....:|:..
  Rat   403 ---EQGTQ-------------ASNADTSALGEETKSASNVPSGKSTDEEE----EAQTPQVPRTL 447

  Fly   664 DPKKP 668
            .|..|
  Rat   448 GPSPP 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CoRestNP_001188671.1 ELM2 92..144 CDD:279754 23/51 (45%)
SANT 179..225 CDD:197842 41/45 (91%)
SANT 180..224 CDD:304392 39/43 (91%)
SANT 540..582 CDD:238096 16/41 (39%)
Rcor3NP_001128457.1 ELM2 57..108 CDD:279754 23/51 (45%)
SANT 143..189 CDD:197842 41/45 (91%)
SANT 144..188 CDD:304392 39/43 (91%)
SANT 345..390 CDD:197842 18/44 (41%)
Myb_DNA-binding 345..388 CDD:278669 17/42 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354557
Domainoid 1 1.000 51 1.000 Domainoid score I11280
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 299 1.000 Inparanoid score I2619
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D287298at33208
OrthoFinder 1 1.000 - - FOG0001182
OrthoInspector 1 1.000 - - otm45420
orthoMCL 1 0.900 - - OOG6_108075
Panther 1 1.100 - - LDO PTHR16089
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1336
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.800

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