DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pfrx and CG13604

DIOPT Version :9

Sequence 1:NP_477451.1 Gene:Pfrx / 32938 FlyBaseID:FBgn0027621 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001262894.1 Gene:CG13604 / 42840 FlyBaseID:FBgn0039137 Length:763 Species:Drosophila melanogaster


Alignment Length:704 Identity:130/704 - (18%)
Similarity:220/704 - (31%) Gaps:237/704 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 TPTLLPRPV---PPSSTRFTSSY--NDDLCTCSNCAYSSFSSSSSSASSTSSSSTSATAAGTALA 160
            |..||.||:   |..|..|...:  .:|.......|.......|:|..|.:.....|..|.....
  Fly   138 TGALLDRPLKLEPYMSQNFMGFFVAEEDANYLKRLALQYVKEVSNSIISDTYEQLDAIVACFPWC 202

  Fly   161 SAAASAVAKKLARSVTATSIMDMPYNTSPSL-------RVRTTSLNQLKKTADLAIEN--ELHVC 216
            .|.:|. .:.:.||  :.||...|:..|..|       :.:..:|..|.:|.|.:..:  ||.:.
  Fly   203 GAVSSG-TRCIPRS--SRSISLEPHVKSLHLTLAYQFPQAQFNALKALVETLDASCASNWELRLY 264

  Fly   217 ---PSVMSEELRKLLPPTSETVMTKPFPIRGERTIADCTTPHVIAMVGLPARGKTFISKKL---- 274
               |.:.:::::|::.|.:                     ||....:.|......:::.::    
  Fly   265 SRDPRLATKQVQKVVYPHN---------------------PHETDELELRIGDYIYLNTEVVDSS 308

  Fly   275 ----ARYLNWIGISTRVFNLGEYRRHA-TTAYKSHEFFRADNEEAMAIRNRCANQALHDSCDWLL 334
                |..::|:..||....:....|.| :.|:..|...:.....|.:                 |
  Fly   309 SDGWAEGISWLTGSTGHLPVNYTERTAESDAWTLHRVVQLSKSVASS-----------------L 356

  Fly   335 SGQGSIAVFDATN-STR--DRRQLIHDIVVKQHGFRLFFVESICDDPQIIEQNILE-----VKVS 391
            :....:.:.|..: ||.  ||:...|..:::...|.        :..|.:|:.:.:     :::.
  Fly   357 TSAEDLDIVDGRSISTEPDDRQNTAHPDIIEGSSFE--------ESEQSVEKYLRQTLKPCLELP 413

  Fly   392 SPDYLNM---------NTELVVRDFLQRIEHYEERYQPIDEV-----------TESHLSFMKVYN 436
            |...||.         ||..:...............||:||:           .:..||....::
  Fly   414 SVQLLNSHNLTHQHNPNTPTIEITTNMSSSSTSMSKQPVDEILVEPPAAQPPRPDDTLSVHSDHS 478

  Fly   437 AGKKVVVYNNEGHVESRIVYYLMNIHITPRTIYLTRHGE----------------------SEYN 479
            .        :.|.:::.        |...|.||:.||||                      .:.|
  Fly   479 L--------HPGSLDAS--------HAKNRKIYIMRHGERVDFTFGTWIPYCFDEFGNYMRKDLN 527

  Fly   480 LSGLI----------GGDSNLSARGHQYANALSTFI--AQQQID--------------------- 511
            :...:          ..||.|:..|...||.:...:  ||.|||                     
  Fly   528 MPKTLPRRKNSPEGWQNDSPLTNVGVYQANLIGQALLEAQVQIDHVYCSPSYRCIQTCTSALEGL 592

  Fly   512 ------------GLRVWTSWMKRAIQTVADVKAPQERWKALNEI-DAGHCEEMTYEQIKEKFPEE 563
                        ||..|.:|....:..          |...||: :|....::.||.::.  ..|
  Fly   593 KLTGKQKIKLEPGLFEWMAWYPSGVPD----------WLTKNELTEAKFDVDLDYEPVQP--ASE 645

  Fly   564 FKARDVNKFAYRYPRGESYEDLVARLEPVIMELERQ--GNVLVVSHQAVLRCLFAYFLDKSADEL 626
            ..||          ..||.|....|...||::|..|  ||:|||:|        |..||..:.:|
  Fly   646 LTAR----------LKESTEQFYERNHDVILQLLEQTTGNILVVAH--------ATTLDTCSRQL 692

  Fly   627 ----PYLYVPLHTVIKLTPVAYGCKVEHIK----------LPIDAVDTHRPKPK 666
                |.....|..||...|......||.:.          ||:    ||...|:
  Fly   693 TGGVPRSTNELRQVIHKIPYCSLATVEQVDGVWKLVEPECLPV----THSKNPR 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PfrxNP_477451.1 6PF2K 254..465 CDD:279872 35/247 (14%)
AAA_33 256..412 CDD:290396 25/181 (14%)
His_Phos_1 468..651 CDD:278716 56/256 (22%)
CG13604NP_001262894.1 UBA_UBS3B 23..60 CDD:270486
SH3_UBASH3 275..333 CDD:212725 9/78 (12%)
His_Phos_1 494..728 CDD:278716 56/263 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0406
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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