DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pcm and RAT1

DIOPT Version :9

Sequence 1:NP_001162796.1 Gene:pcm / 32935 FlyBaseID:FBgn0020261 Length:1613 Species:Drosophila melanogaster
Sequence 2:NP_014691.1 Gene:RAT1 / 854213 SGDID:S000005574 Length:1006 Species:Saccharomyces cerevisiae


Alignment Length:935 Identity:291/935 - (31%)
Similarity:412/935 - (44%) Gaps:280/935 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVPKFFRYISERYP-CLSELAREH-------CIP----------EFDNLYLDMNGIVHNCSHPD 47
            ||||.|||::|.:|| .:|.:..|.       .:|          |.||||||||||||.|||| 
Yeast     1 MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNGELDNLYLDMNGIVHPCSHP- 64

  Fly    48 DNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREA---- 108
            :|......|:|.:. .:|.|.:::..:.:|:::..::||||||||||||||:||||:||:|    
Yeast    65 ENKPPPETEDEMLL-AVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRSARDAQIEN 128

  Fly   109 EQQEAKAAQRGE--------LREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTV 165
            |.:|....||.|        :|..:.:|||.|||||.||.:|...||.:...|::|||.|:...|
Yeast   129 EAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWTAFKLATDPGWKNLQV 193

  Fly   166 ILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFG 230
            |:|....|||||||||::||..:..|:|:|||.||:||||||||.|||.|||.||.:|||:|...
Yeast   194 IISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFAQ 258

  Fly   231 RNVKRTSVEET------------------RFFLLHLGLLREYL--ELEFDALRTDEHKLDIAQLI 275
            .|.||.::::|                  .|..||:.:|||||  ||....|   ....|:.:.|
Yeast   259 DNRKRNNLKDTINMTEEEKQFLQKQNSEQPFLWLHINVLREYLSAELWVPGL---PFTFDLERAI 320

  Fly   276 DDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALT 340
            ||||.|.|..||||:||||||.:..|::.:|...:..:.|.|...:..:|.|||..::..:..|.
Yeast   321 DDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLG 385

  Fly   341 EVELDHFK-EHADDLKYMNNKSEAFD-------MDVGE------ITE--------------SQNL 377
            ..|.|.|| .|..:.:    |.|||:       |..|:      .||              |.||
Yeast   386 SREGDIFKTRHIQEAR----KKEAFERRKAQKNMSKGQDRHPTVATEQLQMYDTQGNLAKGSWNL 446

  Fly   378 DSDLGALINKSMLLYDDDSEE------DCSDENAVLLKEFQ------------------------ 412
            .:.....:.|.::|.::.:||      ..||:|..|:|:..                        
Yeast   447 TTSDMVRLKKELMLANEGNEEAIAKVKQQSDKNNELMKDISKEEIDDAVSKANKTNFNLAEVMKQ 511

  Fly   413 ----------------------------------------------------------------- 412
                                                                             
Yeast   512 KIINKKHRLEKDNEEEEIAKDSKKVKTEKAESECDLDAEIKDEIVADVNDRENSETTEVSRDSPV 576

  Fly   413 --------------------------NYKRNFYRNKFKRDPND--ELIEELCHHYVNALQWVLDY 449
                                      .|...:|..||...|.|  :|.:::...|:..:.|||.|
Yeast   577 HSTVNVSEGPKNGVFDTDEFVKLFEPGYHERYYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMY 641

  Fly   450 YYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLM 514
            ||:|..||:|:||:||.|..:|......:||.|..||||||::||::||||||...||..:..||
Yeast   642 YYQGCASWNWFYPYHYAPLATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLM 706

  Fly   515 LLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHG--- 576
            ..|.|.:.:|||.||..|:||||..|:.:.|:||||:.|||.|:......||..||.||..|   
Yeast   707 SEPDSEIIDFYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPV 771

  Fly   577 ---------------PMY---------VYKY-------STVAQGPMPAYP-------PLR--ALP 601
                           .:|         |.|:       |.:....:..:.       |::  :||
Yeast   772 LLISNKNANYERFSKKLYSKENNNNNVVVKFQHFKSGLSGIVSKDVEGFELNGKIVCPIQGGSLP 836

  Fly   602 VLYCTEVAKWSHEIAVNLPYSVCIELPNAARTVFFPGFPTMQHLPFDFELRNDRVKVFEQ-VSR- 664
            .|..|.:.|.|:.:         |.||:..:::...||...:.:...::|.:...|...| .|| 
Yeast   837 NLSTTLILKMSYRL---------IPLPSRNKSIILNGFIPSEPVLTAYDLDSIMYKYNNQNYSRR 892

  Fly   665 -------NQNIV---------LKPR 673
                   .||||         .|||
Yeast   893 WNFGNDLKQNIVPVGPKGITQYKPR 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pcmNP_001162796.1 XRN1 1..843 CDD:227382 291/935 (31%)
XRN_N 1..225 CDD:281193 119/253 (47%)
RAT1NP_014691.1 XRN1 1..1006 CDD:227382 291/935 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5049
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46801
orthoMCL 1 0.900 - - OOG6_100417
Panther 1 1.100 - - O PTHR12341
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.810

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