Protein Alignment pcm and XRN2

DIOPT Version :9

• Sequence 1: NP_001162796.1
• Gene: pcm / 32935
• FlyBaseID: FBgn0020261
• Length: 1613
• Species: Drosophila melanogaster
• Sequence 2: NP_001190450.1
• Gene: XRN2 / 834261
• AraportID: AT5G42540
• Length: 1023
• Species: Arabidopsis thaliana
• Alignment Length: 703
• Identity: 261/703 - (37%)
• Similarity: 380/703 - (54%)
• Gaps: 141/703 - (20%)

  Fly     1 MGVPKFFRYISERYP-CLSELAREH---------CIP-----------EFDNLYLDMNGIVHNCS 44
            ||||.|:|::.:||| .:.|:..|.         .||           |:||||||||||:|.|.
plant     1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGIIHPCF 65

  Fly    45 HPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAE 109
            ||:|........|  :||.:|:|:|:||.:::|::|.|:::|||||||||||||:||||.|::|.
plant    66 HPEDKPSPTTFTE--VFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAKDAA 128

  Fly   110 QQEAKAAQRGELREH-ER-------------FDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLW 160
            :   .||:..:|||. ||             ||||.||||||||..|...||.::..::::||.|
plant   129 E---AAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYIHVRLNSDPGW 190

  Fly   161 QRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLRE 225
            :...||||....|||||||||.|||..|..|.|:|||.|||||||||||:|.|.|||:||.:|||
plant   191 KNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIMLSLATHEIHFSILRE 255

  Fly   226 EVKF---------------------GRNVKRTS----------VEETRFFLLHLGLLREYLELEF 259
            .|.|                     |:..::|.          |.:..:..:::.:||||||.:
plant   256 VVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVVKKPYEFVNIWILREYLEHD- 319

  Fly   260 DALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINEN 324
              ::....|.::.:||||::.:.|.|||||:||:|.|.|...|:.||...|...:.:....:.::
plant   320 --MQIPGAKKNLDRLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSVYKNKFRSAKKYLTDS 382

  Fly   325 GKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNKSEAFDMD---------------------- 367
            .|||||.::.||.|:...|...|::.|   :....:||.|..|
plant   383 SKLNLRNVERFIKAVGMYENQIFQKRA---QVQQRQSERFRRDKARDKARDNARDNAQASRQFSG 444

  Fly   368 -------VGEITES-----------QNLDSDLGAL---INKSMLLYDDDSEEDCSDENAVLLKE- 410
                   :.|:::|           .:||.::|..   ...|:...:.|:|||...:...||::
plant   445 KLVQLDSLDEVSDSLHSSPSRKYLRLSLDDNIGVANVETENSLKAEELDNEEDLKFKLKKLLRDK 509

  Fly   411 ---FQN--------------YKRNFYRNKFKRDPNDELIE---ELCHHYVNALQWVLDYYYRGVQ 455
               |::              ::..:|..||.....:|:.:   ::...|...|.|::.|||.||.
plant   510 GDGFRSGNGEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVC 574

  Fly   456 SWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSP 520
            ||:|:||:||.||.||||.:|:::|.|.:|:||.||.|||||||:|||..||..|..||..|.||
plant   575 SWNWFYPYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSP 639

  Fly   521 LAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERN 573
            :|:|||.:||.|:|||::.|:.:..:||::|.|||.|....|..|:.||..||
plant   640 IADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRN 692

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pcm	NP_001162796.1	XRN1	1..843	CDD:227382	261/703 (37%)
		XRN_N	1..225	CDD:281193	125/258 (48%)
XRN2	NP_001190450.1	XRN1	1..>720	CDD:227382	261/703 (37%)
		XRN_N	1..255	CDD:281193	125/258 (48%)
		ZnF_C2HC	265..279	CDD:197667	0/13 (0%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5049
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D685597at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100417
Panther	1	1.100	-	-	O	PTHR12341
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.820