Sequence 1: | NP_001162796.1 | Gene: | pcm / 32935 | FlyBaseID: | FBgn0020261 | Length: | 1613 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006243656.1 | Gene: | Xrn1 / 300944 | RGDID: | 1309713 | Length: | 1728 | Species: | Rattus norvegicus |
Alignment Length: | 1855 | Identity: | 599/1855 - (32%) |
---|---|---|---|
Similarity: | 874/1855 - (47%) | Gaps: | 385/1855 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIF 65
Fly 66 NYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGE-LREHERFDS 129
Fly 130 NCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYD 194
Fly 195 PNTRHCLYGLDADLIILGLCTHELHFVVLREEVKF-GRNVKRT-SVEETRFFLLHLGLLREYLEL 257
Fly 258 EFDALRTD-EHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNI 321
Fly 322 NENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALIN 386
Fly 387 KSMLLYDD--------------------------DSEEDCSDENAVLLKEFQNYKRNFYRNKFKR 425
Fly 426 D-PNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFL 489
Fly 490 PFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRL 554
Fly 555 LAAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQ----GPMP-AYPPLRALPVLY-CTEVAKWSH 613
Fly 614 EIAVNLPYSVCIELPNAARTVFFPGFPTMQHLPFDFELRNDRVKVFEQVSRNQNIVL------KP 672
Fly 673 RKRQLEDTLTAVASQYLGKVIHVGWPHLVKAIVVRVATRDQRVDSEG------------------ 719
Fly 720 ITLNDSRR--FDSECKALQEHFINRMGIQFANYDVLVYVRTFAGNSTEFRDKGALMVRDSWSSSV 782
Fly 783 TGYPAQGVVADLTVWERMRKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGRIQVSI 847
Fly 848 MVRPEPKVNAARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPRRQKMENVTKHNI 912
Fly 913 GLQLKYPRQNEERAGYCFRTNNQWYYSSLAVDLMRNYCQRYPDVIDFFGDSNDRAEFVFEQDVFP 977
Fly 978 --NAVGHRRVEELANWVRQQPHMKVERISCGSKTVCRETIELLIAAVDDLRSLP-VKHVKLQVKP 1039
Fly 1040 HLLIKP----NVTLPDVYRSKRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVH 1100
Fly 1101 AVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALVIIKTDEEGKKQNDCELPVRDPQPNQAQD 1165
Fly 1166 EPVRATSSRYVTAAGSTSVPITMKTQI----SDEF--VKTRSDPIARTDSYKPSSEPK-----PV 1219
Fly 1220 PVPEQIT---------------NWRERVSTPTNK-------PQPAPNNWRINRSSSRQQGG---- 1258
Fly 1259 -SIFVAPPTKTPDAAASTASTAFTAASSATLTP---LDQTLALMSVLGVGEDQ---SSPP----- 1311
Fly 1312 ------------LQEAVQQQRPPLL-------------------QQQRAP--------------- 1330
Fly 1331 ---------------FPGQMP----------------NLPKPPLFWQQEAQKQEALQ-------- 1356
Fly 1357 ----QEAQQQEAQKK------QQ--------------------------------QAHAQMEPER 1379
Fly 1380 INSQHFYRSGQTGAALNQPPLGAPSKRQWHEWVHPRMQHANAFHAGVNNGYQMRP----KKNIAA 1440
Fly 1441 QSTFNNNVHMHLQQPYYPNQQQQQQQQQPLQLTEINNAPPRYSTIQDFVPIQAYRPKKLNRVQPA 1505
Fly 1506 GRQDVDATKNPSRSPVLQQPTNETIDTKASSSLPVQSAGEQVIGLMQTLEIKQPAASQSE--SDG 1568
Fly 1569 -VSTGSANAPTATTSSQAVNRRKHRVPRIGAKFDL 1602 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
pcm | NP_001162796.1 | XRN1 | 1..843 | CDD:227382 | 403/904 (45%) |
XRN_N | 1..225 | CDD:281193 | 148/224 (66%) | ||
Xrn1 | XP_006243656.1 | XRN1 | 1..735 | CDD:227382 | 370/754 (49%) |
XRN_N | 1..226 | CDD:281193 | 148/224 (66%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166353513 | |
Domainoid | 1 | 1.000 | 329 | 1.000 | Domainoid score | I1126 |
eggNOG | 1 | 0.900 | - | - | E1_COG5049 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H5894 | |
Inparanoid | 1 | 1.050 | 889 | 1.000 | Inparanoid score | I371 |
OMA | 1 | 1.010 | - | - | QHG54191 | |
OrthoDB | 1 | 1.010 | - | - | D150649at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0006565 | |
OrthoInspector | 1 | 1.000 | - | - | oto95584 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100417 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR12341 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X4804 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
16 | 15.770 |