Sequence 1: | NP_001162796.1 | Gene: | pcm / 32935 | FlyBaseID: | FBgn0020261 | Length: | 1613 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_496945.3 | Gene: | xrn-1 / 175059 | WormBaseID: | WBGene00012730 | Length: | 1591 | Species: | Caenorhabditis elegans |
Alignment Length: | 1785 | Identity: | 554/1785 - (31%) |
---|---|---|---|
Similarity: | 837/1785 - (46%) | Gaps: | 386/1785 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIF 65
Fly 66 NYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHE-RFDS 129
Fly 130 NCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYD 194
Fly 195 PNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFG-----------RNVKRTSVEETRFFLLHL 248
Fly 249 GLLREYLELEF-DALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIG 312
Fly 313 IYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNKS-EAFDMDVGEIT---- 372
Fly 373 ---ESQNLDSDLGALINK-----------------------------------SMLLYDDDS--- 396
Fly 397 EEDCSDENAVLL----------------------KEFQNYKRNFYRNKFK-RDPNDELIEELCHH 438
Fly 439 YVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASA 503
Fly 504 KLLPVAYHDLMLL--PTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLS 566
Fly 567 LEERERNRHG-----------PMYVYKYSTV-AQGPMPAYPPLRALPVLYCTEVAKWSHEIAVNL 619
Fly 620 PYSVCIELPNAARTVFFPGFPTMQHLPFDFELRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAV 684
Fly 685 ASQYLGKVIHVGWPHLVKAIVVRVATRDQRV----DSEGITLN----DSRRFDSECKALQEHFIN 741
Fly 742 RMGIQFANY---------DVLVYVRTFAGNSTEFRDKG----ALMVRDSWSSSVTGYPAQGVVAD 793
Fly 794 LTVWERMRKNF-----LNVEHYFPVGSTIFLITDP---YYGSEGTVQDPRLAYTNG-----RIQV 845
Fly 846 SIMVRPE--PKVNAARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPR------RQ 902
Fly 903 KMENVTKHNIGLQLKYPRQNEERAGYCFR---------TNNQWYYSSLAVDLMRNYCQRYPDV-- 956
Fly 957 -IDFFGDSNDRAEFVFEQDVFPN-AVGHRRVEELANWVRQQPHMKVERISCGSKTVCRE---TIE 1016
Fly 1017 LLIAAVDDLRSLPVKHVKLQVKPHLLIKPNVTLPDVYRSK------RPVRLFDRVVIVRTIYMVP 1075
Fly 1076 VGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALV--- 1137
Fly 1138 --IIKTDEEGKKQNDCEL-----PVRDPQPNQAQDEPVRATSSRYVTAAGSTSVPITMKTQISDE 1195
Fly 1196 FVKTRSD---PIARTDSYKPSSEPKPVPVPEQITNWRERVSTPTNKPQPAPNNWRINRSSSRQQG 1257
Fly 1258 GSIFVAPPTKTPDAAASTASTAFTAASSATLTPLDQTLALMSVLGVGEDQSSP-PLQEAVQQQRP 1321
Fly 1322 PLLQQQRAPFPGQM-----PNLPKPPLFWQQEAQKQEALQQEAQQQEAQKKQQQAHAQMEPERIN 1381
Fly 1382 SQHFYRSGQTGAALNQPPLGAPSKRQWHEWVHPRMQHANAFHAGVNNGYQMRPKKNIAAQSTFNN 1446
Fly 1447 NVHMHLQQPYYPNQQQQQQQQQPLQLTEINNAPPRYSTIQDFVPIQAYRPKKLNRVQPAGRQDVD 1511
Fly 1512 ATKNPSRSPVLQQPTNETIDTKASSSLPVQSAGEQVIGLMQTLEIKQPAASQSESDGVSTGSANA 1576
Fly 1577 PTATTSSQAVNR------RKHRVPRIGAKF 1600 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
pcm | NP_001162796.1 | XRN1 | 1..843 | CDD:227382 | 373/971 (38%) |
XRN_N | 1..225 | CDD:281193 | 141/224 (63%) | ||
xrn-1 | NP_496945.3 | XRN1 | 1..782 | CDD:227382 | 336/801 (42%) |
XRN_N | 1..226 | CDD:281193 | 141/224 (63%) | ||
FYDLN_acid | <363..437 | CDD:302856 | 10/73 (14%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160167066 | |
Domainoid | 1 | 1.000 | 306 | 1.000 | Domainoid score | I741 |
eggNOG | 1 | 0.900 | - | - | E1_COG5049 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H5894 | |
Inparanoid | 1 | 1.050 | 692 | 1.000 | Inparanoid score | I355 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG54191 | |
OrthoDB | 1 | 1.010 | - | - | D150649at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0006565 | |
OrthoInspector | 1 | 1.000 | - | - | oto20824 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100417 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR12341 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4229 |
SonicParanoid | 1 | 1.000 | - | - | X4804 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
16 | 15.800 |