DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32533 and Ythdc2

DIOPT Version :9

Sequence 1:NP_001285437.1 Gene:CG32533 / 32933 FlyBaseID:FBgn0052533 Length:1139 Species:Drosophila melanogaster
Sequence 2:NP_001156485.1 Gene:Ythdc2 / 240255 MGIID:2448561 Length:1445 Species:Mus musculus


Alignment Length:1245 Identity:296/1245 - (23%)
Similarity:452/1245 - (36%) Gaps:448/1245 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 EFSFLDHKAELVGLLQAKSRQVGRSLVENEADFWKFVGKYEAMMRSTGQPVLPPRLAEAELSSMQ 88
            |.:|:...::.:||: :||:..|             ..:|..:.:..|.     ..|.| :.:..
Mouse    89 ERAFIHRLSQSLGLV-SKSKGKG-------------ANRYLTVKKKDGS-----ETAHA-MMTCN 133

  Fly    89 PYHRSKHLALRL---------DADELLQEARDQMQSQFRHILLVYLDFRQTEK------------ 132
            ..|.:||....|         :..|||.      :::..::..|..:.|:..|            
Mouse   134 LTHNTKHAVRSLIQRFPVTNKERTELLP------KTERGNVFAVEAENREMSKTSGRLNNGIPQV 192

  Fly   133 --------FQRIRKLRQTQRNLPIARFRKDLREALDTSRVVIVAGDTGCGKSTQVPQYLYDFGYR 189
                    |...|      ::||:...::::.:.:..::||::.|:||.||:||:||:|.|..::
Mouse   193 PVKRGESEFDSFR------QSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFK 251

  Fly   190 S-----IACTQPRRLACVSLCKRVAHELLDDYGSRVAFQIRFERSRTKLTNILFITEGLLLRQL- 248
            :     |.||||||||.:::.:|||.|..:..|..:.:|||.|...:..|.:.|.|.|:|||.| 
Mouse   252 NGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM 316

  Fly   249 AVAANLDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLILMSATINVELFHGYFGEEGAR 313
            |..:.|.....:|:||:|||:.|.||||...:.||:..|.|||||.||.::|.||..|||  ...
Mouse   317 AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG--SCP 379

  Fly   314 LVQVPGRLFPIK------------------LRYLPPPALELK----------AGQATSK-RSQRN 349
            ::.:.||.|.:|                  |:|......|.|          |.:.|.| .|||.
Mouse   380 VIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTFKPESQRQ 444

  Fly   350 RI-------------------------------------------------DPAPFVQVLSLI-- 363
            |.                                                 |...|.||..||  
Mouse   445 RAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDVDAFAQVFHLILT 509

  Fly   364 --------------------------------------------------------------D-- 364
                                                                          |  
Mouse   510 ENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWMALDWAKHFGQTEIVDLL 574

  Fly   365 QQYPTS-------------------------------------------------------ERGD 374
            :.|..|                                                       :.|.
Mouse   575 ESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYNICHSCDAGA 639

  Fly   375 VLIFVSGVNEIESVVEAV----HEYATEQTHWLVLPLHSGQAIADQSKVFDYAPEGMRKCIVSTN 435
            :|||:.|.:||..:.:.:    ..:|.....:.|..|||....:||.||....|.|:||.|:|||
Mouse   640 ILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTN 704

  Fly   436 IAETSLTVDGVRFVVDSGKVKEMNFDATCKGQRLKEFWVSKSSADQRKGRAGRTGPGVCFRLYTA 500
            |||||:||:.|.||:|||||||.:|||......||..|:||:||.||||||||..||:||||::.
Mouse   705 IAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSR 769

  Fly   501 EQYNAFEAYPTPEIYRVPLD-----TMLLQMVSMGLPDVRAFPFIEAPETER---IEQTILALKQ 557
            .::.....:.|||:.|:||.     |.||..|:..:.|.    .::|||...   :...:..||.
Mouse   770 LRFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCTIADF----LMKAPEPPPALIVRNAVQMLKT 830

  Fly   558 HCALSVEEKITPLGRSLANLPVELSIGKMLLMGSVFPEVEQLLTLAAMLSVQNPLTNRAHTDQR- 621
            ..|:...|.:|.||..||:||||..:|||:|...|...::.:||:|..|:.::|........|: 
Mouse   831 IDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKR 895

  Fly   622 ----CVRER--ESLESDHGDLFTLVRLYNVWVQLKMRRDGTRQWCRRLGIEEQRFYEVTKLRQQF 680
                | |:|  ....|||   ..|:|.:..|  .|.|.||   |       |:.|.|...|.|..
Mouse   896 AAMLC-RKRFTAGTFSDH---MALLRAFQAW--QKARSDG---W-------ERAFCEKNFLSQAT 944

  Fly   681 QRILESCGMVVASDSDSQLTSAERATRHGELRQLKAMKRRQRFEQPRQRKLLKQSAGRVAEDEEE 745
            ..|:  .||              |....|:||....::.|                         
Mouse   945 MEII--IGM--------------RTQLLGQLRASGFVRAR------------------------- 968

  Fly   746 QEEAQGDDMRDVDFRLRFDPRQLALLERSSRLDRHSVVVLLKLLLGSGFYPQLAISDEFNYCKGG 810
                .|.|:|||                ::..:..:||   |..|.:|.||.|...|..|....|
Mouse   969 ----GGGDIRDV----------------NTNSENWAVV---KAALVAGMYPNLVHVDRENVILTG 1010

  Fly   811 GQQFFHTRLKPFVLQHPNSQFAKHFELLKLTESDLLPKPDFYTPKLPLSKRH---------QLLC 866
            .::       ..|..||.|               :|.:|.:  .|:|.:...         ..|.
Mouse  1011 PKE-------KKVRFHPTS---------------VLSQPQY--KKIPPANGQAAAIQALPTDWLI 1051

  Fly   867 YQSLLETAKPYLINCIRLPAAQTLLLF---------------SFAID--------------TNAG 902
            |..:....:...|.|.......|:|:|               ||..|              |.|.
Mouse  1052 YDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRADGIPNDSSDSEMEDRTTAN 1116

  Fly   903 ITQIACDGWLGLDLPMPGSGMELLRRAIELRRRWSRLL----------YDKLDDLKSKQESPSHS 957
            :..:..|.||...|....:.:     .::||::|..|.          :.::|:...:......|
Mouse  1117 LAALKLDEWLNFKLEPEAASL-----LLQLRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLS 1176

  Fly   958 SDDRSSALWQ 967
            ::::|:.|.|
Mouse  1177 TEEQSAGLQQ 1186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32533NP_001285437.1 DEXDc 155..327 CDD:214692 72/195 (37%)
DEXDc 163..298 CDD:238005 62/140 (44%)
Helicase_C 358..490 CDD:278689 66/256 (26%)
HA2 560..640 CDD:214852 28/86 (33%)
OB_NTP_bind <792..897 CDD:285018 24/128 (19%)
Ythdc2NP_001156485.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50
R3H_DEXH_helicase 61..119 CDD:100077 8/43 (19%)
DEXDc 225..364 CDD:238005 60/138 (43%)
DEAH box 331..334 2/2 (100%)
ANK 502..587 CDD:238125 7/84 (8%)
ANK repeat 520..552 CDD:293786 0/31 (0%)
ANK 1 521..553 0/31 (0%)
Ank_4 524..574 CDD:290365 1/49 (2%)
ANK 2 554..586 3/31 (10%)
ANK repeat 554..582 CDD:293786 3/27 (11%)
Helicase_C 625..757 CDD:278689 57/131 (44%)
HA2 831..916 CDD:214852 28/88 (32%)
OB_NTP_bind 954..1081 CDD:285018 35/198 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1179..1303 3/8 (38%)
YTH 1304..1434 CDD:282058
N6-methyladenosine binding. /evidence=ECO:0000250|UniProtKB:Q9Y5A9 1309..1311
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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