DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and Chrna10

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_006229953.1 Gene:Chrna10 / 64574 RGDID:620142 Length:492 Species:Rattus norvegicus


Alignment Length:520 Identity:179/520 - (34%)
Similarity:261/520 - (50%) Gaps:101/520 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LLIMIPAC--AAGPHEKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITN 110
            |||..|.|  |.|....:|...|..||.|..|||.:....|.::..:||.||||:||:||:|...
  Rat    60 LLIHPPECLGAEGRLAHKLFRDLFANYTSALRPVADTDQTLNVTLEVTLSQIIDMDERNQVLTLY 124

  Fly   111 IWLKLEWNDMNLRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYATNVVVRNNGSCLY 175
            :|::.||.|..|.|:...:|.:..:|||...:|:||:::||.||.....:.:||||||::|:..:
  Rat   125 LWIRQEWTDAYLHWDPKAYGDLDAIRIPSRLVWRPDIVLYNKADTQPPASASTNVVVRHDGAVRW 189

  Fly   176 VPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDLLGVP 240
            ..|.|.:|:|::|::.||||.|||.:.|||||:.|.|||::.:. ....::.|:.|.||.:||:|
  Rat   190 DAPAITRSSCRVDVSAFPFDAQRCGLTFGSWTHGGHQLDVRPRG-TSASLADFVENVEWRVLGMP 253

  Fly   241 GKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVT 305
            .:|..:.|.||.|||.|:||.:|:||:...|..||::|||.|:.:|.|.|.||.|||||:|||||
  Rat   254 ARRRVLTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVFISLLAPLAFHLPADSGEKVSLGVT 318

  Fly   306 ILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNPDTHEMSEWIR 370
            :||:||||..::||:|| .:::|||:|.|:...|.||..|...||||:|.|:..|:.|.:..|.|
  Rat   319 VLLALTVFQLILAESMP-PAESVPLIGKYYMATMTMVTFSTALTILIMNLHYCGPNAHPVPAWAR 382

  Fly   371 VIFLYWL-----------PCILRMQRPGQVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSKS 424
            |:.|..|           ||  ...:|.:......|||:|.:......:....|         ::
  Rat   383 VLLLGHLAKGLCVRERGEPC--GQSKPLESAPSLQPPPASPAGPCHEPRCLCHQ---------EA 436

  Fly   425 LLANVLDIDDDFRCNHRCASATLPHQPTYYRTMYRQGDDGSVGPVGPAGPVVDGRLHEAISHTCL 489
            ||.::..|...|| :||.|.                                  |.||       
  Rat   437 LLHHIASIASTFR-SHRAAQ----------------------------------RRHE------- 459

  Fly   490 TSSAEYELALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRLCLIIFTLFTIIATLAVLFSA 554
                                             |||..|.|:||..|.||....::.:|.||..|
  Rat   460 ---------------------------------DWKRLARVMDRFFLGIFFCMALVMSLIVLVQA 491

  Fly   555  554
              Rat   492  491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 168/499 (34%)
Neur_chan_LBD 61..268 CDD:280998 85/206 (41%)
Neur_chan_memb 275..552 CDD:280999 83/287 (29%)
Chrna10XP_006229953.1 LIC 60..476 CDD:273305 173/503 (34%)
Neur_chan_LBD 77..280 CDD:280998 84/203 (41%)
Neur_chan_memb 288..482 CDD:280999 81/280 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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