DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and chrna2b

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_697298.4 Gene:chrna2b / 568849 ZFINID:ZDB-GENE-041001-99 Length:550 Species:Danio rerio


Alignment Length:534 Identity:200/534 - (37%)
Similarity:290/534 - (54%) Gaps:46/534 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 ACAAGPH---EKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKL 115
            :|....|   |..|...|.|.||...|||.|.||.:.:.|||::.|:||||||||::.||:|||.
Zfish    25 SCCEKTHSHAEDELFKKLFDGYNKWSRPVPNTSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQ 89

  Fly   116 EWNDMNLRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYATNVVVRNNGSCLYVPPGI 180
            ||||..|||..|::..|..:|:|...:|.||:::||:||..|..|:.|...:.:.|...:|||.|
Zfish    90 EWNDYKLRWKPSDYDNVTSIRVPSELIWVPDIVLYNNADGEFAVTHMTKAHLFHTGKVRWVPPAI 154

  Fly   181 FKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDLLGVPGKRNE 245
            :||:|.||:|:||||.|.|:|||||||||..::||: :.|...|:..:..:|||.::...|..|.
Zfish   155 YKSSCSIDVTFFPFDQQNCKMKFGSWTYDKAKIDLE-RIENTVDLKDYWESGEWAIINAVGTYNT 218

  Fly   246 IYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVTILLSL 310
            ..|:||.|.|.|||:..:|||..|:|..|||:||:||:.:.:|.|.||.|.|||::|.:::||||
Zfish   219 KKYDCCHEIYPDITYFFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSDCGEKITLCISVLLSL 283

  Fly   311 TVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLY 375
            ||||.::.|.:|:||..:||:|.|....|..|..|:|.|:.:||.|||:|.||:|..|:..:||.
Zfish   284 TVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPSTHKMPCWVHSVFLD 348

  Fly   376 WLPCILRMQRPG--------------QV-GYECPPPPSSSSSSASGEKKQQI-QNVELKERSSKS 424
            .:|..|.|:||.              || |....|..:|.|:|.|..:.|.. ::...:..|.|.
Zfish   349 LIPRWLFMRRPAPDSRRRQKLLLLQRQVPGMTARPANASLSTSTSWFRGQNSGEDESCRHFSYKD 413

  Fly   425 LLANVLD--IDDDFRCNHRCASATLPHQPTYYRTMYRQGDDGSVGP-----VGPAGPVVDG---- 478
            |....|.  |....:.:..|.....|  |...:          .||     ||.|...:.|    
Zfish   414 LELGTLSSAISLSLQASSPCPLGLTP--PPLQK----------FGPAPRLEVGTASRQLSGRANV 466

  Fly   479 --RLHEAISHTCLTSSAEYELALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRLCLIIFTL 541
              ||...|.|..........:...|:.:.:|.:.|:.||....:..|||:.|||:||:.|.:|.:
Zfish   467 TKRLDNMIPHDNPGFPLSPSVLQALEGVHYIADHLRAEDADFSVKEDWKYVAMVIDRIFLWMFII 531

  Fly   542 FTIIATLAVLFSAP 555
            ..::.|:. ||..|
Zfish   532 VCLLGTIG-LFLPP 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 195/520 (38%)
Neur_chan_LBD 61..268 CDD:280998 96/206 (47%)
Neur_chan_memb 275..552 CDD:280999 96/305 (31%)
chrna2bXP_697298.4 LIC 6..543 CDD:273305 199/531 (37%)
Neur_chan_LBD 35..241 CDD:280998 96/206 (47%)
Neur_chan_memb 248..541 CDD:280999 96/305 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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