DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and nAChRalpha2

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster


Alignment Length:582 Identity:219/582 - (37%)
Similarity:316/582 - (54%) Gaps:77/582 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PGQDRTRSMSFPQPHSLPEATANGGRMLVYGLGLLIMIPACAAGPHEKRLLHALLDNYNSLERPV 79
            ||...||    |:|.:|........:.|...|.||::.....|.|..|||...||.|||.|.|||
  Fly     3 PGCCTTR----PRPIALLAHIWRHCKPLCLLLVLLLLCETVQANPDAKRLYDDLLSNYNRLIRPV 63

  Fly    80 VNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMNLRWNSSEFGGVRDLRIPPHRLWK 144
            .|.:|.:.:..||.|.|:||::.|:|:|.||:||:.||.|...:|:.||:|||.:|.:|...:|.
  Fly    64 SNNTDTVLVKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWL 128

  Fly   145 PDVLMYNSADEGFDGTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYD 209
            ||:::||:||..:..|..|..::...|..::.||.||||:|:||:.:||||.|.|.|||||||||
  Fly   129 PDIVLYNNADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYD 193

  Fly   210 GFQLDL----QLQD-----EAGGDISSFITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFAILIR 265
            |.|:||    |..|     |.|.|:..:..:.|||:||||.:|:|.||.||.|||.||.|.|.:|
  Fly   194 GDQIDLKHISQKNDKDNKVEIGIDLREYYPSVEWDILGVPAERHEKYYPCCAEPYPDIFFNITLR 258

  Fly   266 RKTLYYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPL 330
            ||||:|..|||:|||.|:.:::|.|.||.|||||::|.::||||.|:|..:::|.:|:||.|:||
  Fly   259 RKTLFYTVNLIIPCVGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPL 323

  Fly   331 LGTYFNCIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPP 395
            ||.|....|.:|..|||.||:|||.|:|.|.||:|..|||..|:..||.:|.|:.|         
  Fly   324 LGKYLLFTMLLVGLSVVITIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLMRVP--------- 379

  Fly   396 PPSSSSSSASGEKKQQIQNVELKE-----RSSKSLLANVLDIDDDFRCNHRCASATLPHQPTYYR 455
                         |..::::...:     :.||:.....|  .|:.:.|...:|      |...|
  Fly   380 -------------KDLLRDLAANKINYGLKFSKTKFGQAL--MDEMQMNSGGSS------PDSLR 423

  Fly   456 TMYRQGDDGS---------------VGPVGPAG------------PVVDGRLHEAISHTCLTSSA 493
            .|  ||..|:               .|.||..|            |.|...|.:::|........
  Fly   424 RM--QGRVGAGGCNGMHVTTATNRFSGLVGALGGGLSTLSGYNGLPSVLSGLDDSLSDVAARKKY 486

  Fly   494 EYELALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRLCLIIFTLFTIIATLAVLFSAP 555
            .:||...:..:.:|...::::||.:...:||.|.|||:|||.|.:|.:.:::.|..:|..||
  Fly   487 PFELEKAIHNVMFIQHHMQRQDEFNAEDQDWGFVAMVMDRLFLWLFMIASLVGTFVILGEAP 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 203/529 (38%)
Neur_chan_LBD 61..268 CDD:280998 103/215 (48%)
Neur_chan_memb 275..552 CDD:280999 95/308 (31%)
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 105/218 (48%)
LIC 47..544 CDD:273305 202/528 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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