DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and GluClalpha

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:562 Identity:115/562 - (20%)
Similarity:204/562 - (36%) Gaps:163/562 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 YGLGLLIMIPACAAG----------PHEKRLLHALL--DNYNSLERPV-VNESD-PLQLSFGLTL 94
            |...:|.....|:|.          ..||::|..:|  ..|::..||. :|.:| |..:...:.:
  Fly     6 YFWAILYFASLCSASLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFV 70

  Fly    95 MQIIDVDEKNQLLITNIWLKLEWNDMNLRWNSSEFGGVRDLRI-PPHRLWKPDVLMYNSADEGFD 158
            ..|..:|:........:..:.:|.|..|:::..: |.::.|.: ..:|:|.||:...|..:..|.
  Fly    71 RSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQ-GRLKYLTLTEANRVWMPDLFFSNEKEGHFH 134

  Fly   159 GTYATNVVVR--NNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGS--WTYDGFQLDLQ-LQ 218
            .....||.:|  .|||.||.........|.:::..:|.|.|.|.::..|  ||.:    ||. |.
  Fly   135 NIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTN----DLVFLW 195

  Fly   219 DEAGGDISSFITNGEWDLLGVP-------------GKRNEIYYNCCPEPYIDITFAILIRRKTLY 270
            .|  ||....:.|     |.:|             .|.|...|:|..   :|:.|    :|:..|
  Fly   196 KE--GDPVQVVKN-----LHLPRFTLEKFLTDYCNSKTNTGEYSCLK---VDLLF----KREFSY 246

  Fly   271 YFFNLIVPCVLIASMALLGFTLPPDSG---EKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLG 332
            |...:.:||.::..::.:.|.|  |.|   .::|||||.||::....:.:..::|..|       
  Fly   247 YLIQIYIPCCMLVIVSWVSFWL--DQGAVPARVSLGVTTLLTMATQTSGINASLPPVS------- 302

  Fly   333 TYFNCIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPPP 397
                                  |      |..:..|..|...:....:|..   ..|.|      
  Fly   303 ----------------------Y------TKAIDVWTGVCLTFVFGALLEF---ALVNY------ 330

  Fly   398 SSSSSSASGEKKQQIQNVELK----ERSSKSLLANVLDIDDDFRCNHRCASATLPHQPTYYRTMY 458
              :|.|.|.:.....:|::.|    |::|....:::||.|         ::||......:.|   
  Fly   331 --ASRSGSNKANMHKENMKKKRRDLEQASLDAASDLLDTD---------SNATFAMASQFAR--- 381

  Fly   459 RQGDDGSVGPV--GPAGPV-VDGRLHEAI-------SHTCLTSSAEYELALILKELRWITE---Q 510
               ..|...|:  .|..|: ::.||...:       .:.|.|               |:::   :
  Fly   382 ---GGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKT---------------WLSKFPTR 428

  Fly   511 LKKEDETSDITRDWKFAAMVVDRLCLIIFTLFTIIATLAVLF 552
            .|:.|..|.||..             ::|.||.::.....||
  Fly   429 SKRIDVISRITFP-------------LVFALFNLVYWSTYLF 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 109/531 (21%)
Neur_chan_LBD 61..268 CDD:280998 55/229 (24%)
Neur_chan_memb 275..552 CDD:280999 52/296 (18%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 113/558 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447321
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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