DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha7 and nAChRalpha4

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001097669.2 Gene:nAChRalpha4 / 40521 FlyBaseID:FBgn0266347 Length:539 Species:Drosophila melanogaster


Alignment Length:551 Identity:217/551 - (39%)
Similarity:317/551 - (57%) Gaps:78/551 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LVYGLGLLIMIPACAAGPHEKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQL 106
            :|:|        |.|..|..|||...||.|||.|.|||||.:|.|::...|.|.|:|||:.|||:
  Fly     1 MVHG--------AVAGNPDAKRLYDDLLSNYNKLVRPVVNTTDVLKVCIKLKLSQLIDVNLKNQI 57

  Fly   107 LITNIWLKLEWNDMNLRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYATNVVVRNNG 171
            :.||:|::..|.|..|||...|:|||..|.:|...:|:||:::||:||..|:.|.||...:.:.|
  Fly    58 MTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYSEG 122

  Fly   172 SCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDE--------AGGDISSF 228
            ...:.||.|:||:|:||:.:||||:|.|.:||||||||||::||:..||        .|.|:|.|
  Fly   123 LVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHMDEQQGSNVVAVGVDLSEF 187

  Fly   229 ITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLP 293
            ..:.|||:|.||..|||.:|.||.|||:||||.|.:|||||:|..|:|:||:.|:.:.:|.|.||
  Fly   188 YMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLP 252

  Fly   294 PDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHR 358
            .|||||::|.::||:||.||..:|.|.:|.||..|||||.|....|.:|:.|:..|:::||.|.|
  Fly   253 SDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFR 317

  Fly   359 NPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYE-----------CPPPPSSSSS----SASGEK 408
            :|.||:|:.|::.:|:.:||..|.::|| ...:|           |..|..|:::    .:||  
  Fly   318 SPQTHKMAPWVKRVFIDFLPAFLFIKRP-TYNFETSKLLLKDTHACFYPYYSATNIDRLVSSG-- 379

  Fly   409 KQQIQNVELKERSSKSLLANVLDIDDDF--RCN-H-------RCASATLPHQPTYYRTMYRQGDD 463
               ..|...||..|:|:.||     ..|  .|. |       .|:|..:...|           |
  Fly   380 ---YNNSLPKEDLSQSITAN-----GPFGGSCQVHGPVPPLTHCSSDEIAAVP-----------D 425

  Fly   464 GSVGPVGPAGPVVDGRLHEAISHT-CLTSSAEYELALILKE---LRWITEQLKKEDETSDITRDW 524
            ..:||:|...|:::   :.|.||: ||..        |.|.   :|:|.|..|.:::::.:..||
  Fly   426 MDIGPLGMKSPILN---NPAFSHSKCLPK--------IHKSCFCVRFIAEHTKMQEDSTKVKEDW 479

  Fly   525 KFAAMVVDRLCLIIFTLFTIIATLAVLFSAP 555
            |:.|||:|||.|.||||..::.|..::..||
  Fly   480 KYVAMVLDRLFLWIFTLAVVVGTAGIILQAP 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 210/525 (40%)
Neur_chan_LBD 61..268 CDD:280998 105/214 (49%)
Neur_chan_memb 275..552 CDD:280999 100/305 (33%)
nAChRalpha4NP_001097669.2 LIC 1..505 CDD:273305 215/544 (40%)
Neur_chan_LBD 12..227 CDD:280998 105/214 (49%)
Neur_chan_memb 234..505 CDD:280999 100/303 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447299
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.