DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and acr-15

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_505206.2 Gene:acr-15 / 191602 WormBaseID:WBGene00000054 Length:479 Species:Caenorhabditis elegans


Alignment Length:519 Identity:186/519 - (35%)
Similarity:273/519 - (52%) Gaps:57/519 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 LGLLIMIPACAAGPHEKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITN 110
            |..|::|......|.|.||::.|:..|...|||.::.|.|:.:|.|:.|.|||::.||.:.|..|
 Worm     7 LHFLLLITQLNGSPAEVRLINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVN 71

  Fly   111 IWLKLEWNDMNLRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYATNVVVRNNGSCLY 175
            .|||.:|.|.||||..:.:..|.|||.||..||.||:|:|||.|..||.:|..|:|..:.|:..:
 Worm    72 AWLKFQWRDENLRWEPTAYENVTDLRHPPDALWTPDILLYNSVDSEFDSSYKVNLVNYHTGNINW 136

  Fly   176 VPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDLLGVP 240
            :||||||.:||:||.|||||:|.|..|||||||...::.|:..|   .|.|.||.||||.::...
 Worm   137 MPPGIFKVSCKLDIYWFPFDEQVCYFKFGSWTYTRDKIQLEKGD---FDFSEFIPNGEWIIIDYR 198

  Fly   241 GKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVT 305
            .......|.||||.|.||||.:.:||:||||.||||.|.:|...:.:||||:.|::.||:.|.::
 Worm   199 TNITVKQYECCPEQYEDITFTLHLRRRTLYYSFNLIAPVLLTMILVILGFTVSPETCEKVGLQIS 263

  Fly   306 ILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNPDTHE-MSEWI 369
            :.|::.:||.:::|..|.||:||||||.:|:...|:...:...|:.:.::|.||...|| |..|:
 Worm   264 VSLAICIFLTIMSELTPQTSEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWM 328

  Fly   370 RVIFLYWLPCILRMQRPGQVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSKSLLANVLDIDD 434
            |.|.|.|.|.:|||:.|.:                  |...|......|.|:.:..:|       
 Worm   329 RFILLEWSPWLLRMKMPDR------------------ENNFQTLTESWKGRNRRESMA------- 368

  Fly   435 DFRCNHRCASATLPHQPTYYRTMYRQGDDGSVGPVGPAGPVVDGRLHEAISHTCLTSSAEYE--- 496
                                ||.:... ||.|..:...|.::.....|.|........|:.:   
 Worm   369 --------------------RTAFEYA-DGPVTQIHSMGIMLKDNFEELIYQVKQEKIADEKGIE 412

  Fly   497 ----LALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRLCLIIFTLFTIIATLAVLFSAPH 556
                |..|...::.|.|.....||.|.:..:|:|||:|||||||:.|:|..::.::.:...||:
 Worm   413 RLRVLQKIYDHVKMIREHDDDNDEDSRVALEWRFAAIVVDRLCLLAFSLLIVVVSIIIALRAPY 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 181/496 (36%)
Neur_chan_LBD 61..268 CDD:280998 96/206 (47%)
Neur_chan_memb 275..552 CDD:280999 78/284 (27%)
acr-15NP_505206.2 LIC 19..470 CDD:273305 181/499 (36%)
Neur_chan_LBD 22..226 CDD:280998 96/206 (47%)
Neur_chan_memb 233..470 CDD:280999 78/282 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3646
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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