DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and acr-14

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_495716.1 Gene:acr-14 / 191601 WormBaseID:WBGene00000053 Length:500 Species:Caenorhabditis elegans


Alignment Length:533 Identity:196/533 - (36%)
Similarity:280/533 - (52%) Gaps:87/533 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 EKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMNLRWN 125
            |.|||..|.:||:|.||||.|.|.||.:.....|.||:|||||||::....::...|||..|.|:
 Worm    21 EYRLLQYLKENYDSFERPVENSSAPLDVKVRFLLNQIMDVDEKNQVMSILAYMDYHWNDYKLTWD 85

  Fly   126 SSEFGGVRDLRI-----PPHRLWKPDVLMYNSADEGFDGTYATNVVVRNNGSCLYVPPGIFKSTC 185
            ...|||:||:|.     ...:||:||||::||..|.||.||::..:|.:||.....|||||:..|
 Worm    86 PKLFGGIRDVRFSGDDDASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDVQQNPPGIFRFVC 150

  Fly   186 KIDITWFPFDDQRCEMKFGSWTYDG--FQLDLQLQDEAG--G----------------------- 223
            :||:|::|||.|.|.:|.|||||:|  ..||..|....|  |                       
 Worm   151 QIDVTYYPFDKQTCFLKLGSWTYNGQYINLDFLLTQIIGLHGIPIVVEPERSSTNYASYFVNESI 215

  Fly   224 DISSFITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALL 288
            |:..::.||||||.|.||||  :......:.|.::.|.|.|||:||.|..|||:|.::|:.|.:|
 Worm   216 DLQVYLQNGEWDLEGTPGKR--VVQKFGTDEYHELYFYIHIRRRTLAYGINLIIPSLVISMMTIL 278

  Fly   289 GFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILIL 353
            |||||||:.||::|..|:|||:..||.||:.|.|..|.:||:|..:|:|.:.:||.|.|.|:|.|
 Worm   279 GFTLPPDACEKITLETTVLLSVIFFLQMVSSTSPPQSQSVPILAAFFSCCLMLVACSCVFTVLTL 343

  Fly   354 NYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPPPSSSSSSASGEKKQQIQNVELK 418
            :.|||.|:|||||..:|.||:.|||.||.|.:|...  :.|.|.....|.|...:...|..:.|.
 Worm   344 SLHHRKPETHEMSPTMRKIFIDWLPYILCMCKPDHP--KTPKPKVLGKSIAPIHRLSTIPMLNLP 406

  Fly   419 ERSSKSLLANVLDIDDDFRCNHRCASATLPHQPTYYRTMYRQGDDGSVGPVGPAGPVVDGRLHEA 483
                                  |.:..|.|.:..:   :|                      ||.
 Worm   407 ----------------------RVSQTTFPDKNVF---VY----------------------HEV 424

  Fly   484 ISHTCLTSSAEYELALILKELRWITEQLKKEDETSDITR-DWKFAAMVVDRLCLIIFTLFTIIAT 547
            .:....||....||.:|.:::..:.::: :||...|:.| :|:||||.||||||.:|:.|..:.|
 Worm   425 PAVIKNTSRICAELLIIERDIEKMLDKI-EEDTKEDMLRSEWRFAAMAVDRLCLYVFSAFITMIT 488

  Fly   548 LAVLFSAPHFIVS 560
            ..::  .||.:.:
 Worm   489 CGLI--VPHILAN 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 193/519 (37%)
Neur_chan_LBD 61..268 CDD:280998 97/238 (41%)
Neur_chan_memb 275..552 CDD:280999 93/277 (34%)
acr-14NP_495716.1 LIC 21..483 CDD:273305 192/513 (37%)
Neur_chan_LBD 21..258 CDD:280998 97/238 (41%)
Neur_chan_memb 265..491 CDD:280999 93/275 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3646
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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