DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and acr-9

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_510285.2 Gene:acr-9 / 191597 WormBaseID:WBGene00000048 Length:534 Species:Caenorhabditis elegans


Alignment Length:533 Identity:219/533 - (41%)
Similarity:322/533 - (60%) Gaps:62/533 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 EKRLLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMNLRWN 125
            |.|||..|..||:..||||.|.|:||.:|..:.|.||:|||||||::....|::.:|.|..|:|:
 Worm    28 EYRLLADLRHNYDPYERPVANASEPLVVSVKIYLQQILDVDEKNQVITLVAWIEYQWTDYKLKWD 92

  Fly   126 SSEFGGVRDLRIP--PHRLWKPDVLMYNSADEGFDGTYATNVVVRNNGSCLYVPPGIFKSTCKID 188
            .||:||::|:|||  .:.:||||||:||||||.||.||..|.||...|..|.|||||.|.:||||
 Worm    93 PSEYGGIKDIRIPGNANAIWKPDVLLYNSADENFDSTYPVNYVVSYTGDVLQVPPGILKLSCKID 157

  Fly   189 ITWFPFDDQRCEMKFGSWTYDGFQLDLQLQ-------DEAGGDISSFITNGEWDLLGVPGKRNEI 246
            ||:||||||.|.:|||||||.|..:||::.       .:.|.|:..::.||||:||.||.:....
 Worm   158 ITYFPFDDQICHLKFGSWTYSGNFIDLRINGPEGKNISDEGIDVQYYVQNGEWNLLAVPARHETN 222

  Fly   247 YYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLT 311
            .::  .:||..:.|.::|:|:||||..|||:|..||:.|.:||||||||:|||::|.:|||||:.
 Worm   223 IFD--EQPYPSLFFYLIIQRRTLYYGLNLIIPSFLISLMTVLGFTLPPDAGEKITLEITILLSVC 285

  Fly   312 VFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLYW 376
            .||:|||:..|.||:||||:|.:|:|.|.:|::|||.|:|:||.|:|.|:|||||.::|.:.|.|
 Worm   286 FFLSMVADMTPPTSEAVPLIGAFFSCCMLVVSASVVFTVLVLNLHNRKPETHEMSPFLRELLLIW 350

  Fly   377 LPCILRMQRPGQVGYEC----------------------PPPPSSSSSSASGEKKQQIQNVELKE 419
            ||.:|.|:|||:..:.|                      |..|:.|...:.|  ...::|::|..
 Worm   351 LPWLLLMRRPGKTIFNCTHLKAEKAEEKAKQGSIKNGVGPGKPTDSVHPSEG--LSLMKNIKLGR 413

  Fly   420 RSSKSLLANVLDIDDDFRCNHR----CASATLPHQPTYYRTMYRQGDDGSVGPVGPAGPVVDGRL 480
            :.:       :|.:.:|...|.    .|.:.:..:.||.:.|.....:          .||...|
 Worm   414 QQT-------IDFEYEFHVQHNHLMPVAPSEMTPRVTYSKVMAESYVE----------DVVMTEL 461

  Fly   481 HEAISHTCLTSSAEYELALILKELRWITEQLKKEDETSDITRDWKFAAMVVDRLCLIIFTLFTII 545
            ::.:...||      ||..|..:.|.:.:::::::.......|||||||||||.|||.|::|.::
 Worm   462 NKYMQKACL------ELKNISSQTRAMRKKMEEDERDEQAANDWKFAAMVVDRCCLITFSVFIVV 520

  Fly   546 ATLAVLFSAPHFI 558
            :|..::||:||.|
 Worm   521 STCGIMFSSPHLI 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 213/521 (41%)
Neur_chan_LBD 61..268 CDD:280998 104/215 (48%)
Neur_chan_memb 275..552 CDD:280999 105/302 (35%)
acr-9NP_510285.2 LIC 28..525 CDD:273305 214/523 (41%)
Neur_chan_LBD 28..242 CDD:280998 104/215 (48%)
Neur_chan_memb 249..525 CDD:280999 105/300 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 191 1.000 Domainoid score I1903
eggNOG 1 0.900 - - E1_KOG3646
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45242
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X767
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.890

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