DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and lgc-19

DIOPT Version :10

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_502905.2 Gene:lgc-19 / 190895 WormBaseID:WBGene00013655 Length:400 Species:Caenorhabditis elegans


Alignment Length:335 Identity:77/335 - (22%)
Similarity:151/335 - (45%) Gaps:52/335 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LDNYNSLERPVVNESDP----------LQLSFG--------------LTLMQIIDVDEKNQLLIT 109
            ||...:|.:.:..:.||          :.|..|              |..:::::|.|..:.:..
 Worm    31 LDVQRNLTKHIFRDYDPTVSPVYTWVDVDLPIGYDNEAPKRYNYTIFLYYLKLVEVQEPQEKISV 95

  Fly   110 NIWLKLEWNDMNLRWNSSEFGGVRDLRIPPHRLWKPDVLMYNSAD-EGFDGTYATNVVVRNNGSC 173
            .:.:...|.|..|.||:|.:.....:.:...::|.|.:.::...| ..|.......:.:.|.|..
 Worm    96 VMEIMEYWYDARLSWNASAWQNTTMIYMKQDKVWSPTISVFGVNDIVDFRDNDNRLICIENTGFI 160

  Fly   174 L-YVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDL------QLQDEAGGDISSFITN 231
            . ||...: .:.|::|::.||||.|.|:::|....:...|:|:      ::.||.   |...:.|
 Worm   161 WDYVSVRV-SANCEMDVSRFPFDTQICQIRFCLPIFYRVQVDILNEIYEEIMDER---IFKTMGN 221

  Fly   232 GEWDLLGVPGKRNEIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLG-FTLPPD 295
            .||.||.:..:...:.||..........|.|.|||..|||.:.::.|..:|..::::| |....|
 Worm   222 SEWKLLNLTNRVEALVYNDNMGTMDLAIFEITIRRNPLYYIYMIVFPSFIINFVSIVGVFLNGAD 286

  Fly   296 SGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTY--FNCIMFMVASSVVSTILILNYHHR 358
            ...:|::|:|.::::|..|.::|:.:|.|.: :||||.|  .|.::.::|.::|:.|.       
 Worm   287 KMSRLNVGLTNIMTMTFILGVMADKIPRTGN-IPLLGIYIIINLVIMLIAIAIVTAIT------- 343

  Fly   359 NPDTHEMSEW 368
                 |:.:|
 Worm   344 -----ELRKW 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:455710 77/335 (23%)
lgc-19NP_502905.2 LGIC_ECD_cation 75..257 CDD:349790 42/185 (23%)
Cys-loop 172..186 CDD:349790 7/13 (54%)
LGIC_TM_cation 259..>346 CDD:349853 26/99 (26%)
TM1 helix 259..284 CDD:349853 7/24 (29%)
TM2 helix 292..313 CDD:349853 5/20 (25%)
TM3 helix 323..346 CDD:349853 6/34 (18%)

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