DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and lgc-1

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_504154.5 Gene:lgc-1 / 188099 WormBaseID:WBGene00020236 Length:371 Species:Caenorhabditis elegans


Alignment Length:335 Identity:80/335 - (23%)
Similarity:151/335 - (45%) Gaps:46/335 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 NYNSLERPVVNESDPLQLSFG-LTLMQIIDVDEKNQLLITNIWLKLEWNDMNLRWNSSEFGGVRD 134
            |..:...|.:.|   |:|:.. |.|:.:::|:||...|...:   .||.|..|:||..|:||:..
 Worm    44 NQTATIHPPITE---LKLTMAMLKLVDVVEVEEKVTFLFDYL---AEWTDQRLKWNPLEYGGISH 102

  Fly   135 LRIPPHRLWKPDVLMYNSAD-EGFDGTYATNVV-VRNNGSCLYVPPGIFKST-----CKIDITWF 192
            :.:|...:|.|:|.:.::.: :.|:...|.... :..||:     .|.:.||     |::|:..|
 Worm   103 IYVPQRMIWLPEVTIADAHEVKFFESDDAPRTAWINYNGT-----TGFYTSTVSSVICQLDVYKF 162

  Fly   193 PFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDL--LGVPGKRNEIYYNCCPEPY 255
            |.|...|.:.....||...:..::...|......|.:.||||.:  :||..:.....::....  
 Worm   163 PLDRHECGVSVLFHTYFADEYVIKSDMEPLPKPLSQLGNGEWKVTYIGVAEEIGNGNFSAVQR-- 225

  Fly   256 IDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDS-GEKLSLGVTILLSLTVFLNMVAE 319
                |...|.|...:|...::||...|..::::...|..:: |||:::|:|.::::|..|.::|:
 Worm   226 ----FVARIERNPGFYVTLVMVPAFFINFLSIIALCLNIENVGEKITVGLTNIMAMTFILVILAQ 286

  Fly   320 TMPATSDAVPLLGTY--FNCIMFMVASSVVSTILILNYH--------HRNPDTHEMSEWIR---- 370
            .:|.|. .:|||..|  ...::.|.:..||.|:.::..|        ...|.....|:|..    
 Worm   287 DLPKTK-RIPLLAIYVIVGLVIVMASIGVVLTLPLIRNHLKKRQKGKEEKPVETRFSKWFGWLTV 350

  Fly   371 ---VIFLYWL 377
               |:|::.|
 Worm   351 EYVVMFVFQL 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 80/335 (24%)
Neur_chan_LBD 61..268 CDD:280998 50/206 (24%)
Neur_chan_memb 275..552 CDD:280999 29/121 (24%)
lgc-1NP_504154.5 Neur_chan_LBD 84..>335 CDD:332142 63/262 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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