DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha7 and lgc-9

DIOPT Version :9

Sequence 1:NP_001162795.1 Gene:nAChRalpha7 / 32928 FlyBaseID:FBgn0086778 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_500341.1 Gene:lgc-9 / 182195 WormBaseID:WBGene00015412 Length:464 Species:Caenorhabditis elegans


Alignment Length:356 Identity:93/356 - (26%)
Similarity:162/356 - (45%) Gaps:40/356 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LLHALLDNYNSLERPVVNESDPLQLSFGLTLMQIIDVDEKNQLLITNIWLKLEWNDMNLRWNSSE 128
            |:..:...|:...||....:.|:.:...:.|..:.:|.|..|:....|....:|.|..|.||.::
 Worm    44 LIETIQRRYDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLAWNPAD 108

  Fly   129 FGGVRDLRIPPHRLWKPDVLMYNSADEG---FDGTYATNVVVRNNGSCLYVPPGIFKSTCKIDIT 190
            ..|:..:.:|...:|.|.:.:|||.|..   .|..|  :|.:::.|......|....:.|:|:|.
 Worm   109 HSGLTQVVMPRSLVWVPKLFIYNSMDTKDMLTDDRY--DVRIQHTGHVKVNSPQFVSTLCRINID 171

  Fly   191 WFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFIT-NGEWDLLGVPGK----------RN 244
            .||||.|.|.:...|......::|:.....   .:.|:.: |.||.::.|..|          |.
 Worm   172 LFPFDTQFCAIALASPLLSVEEMDVNATQP---PVDSYFSGNAEWQVMNVTVKQMKFMEEGEYRA 233

  Fly   245 EIYYNCCPEPYIDITFAILIRRKTLYYFFNLIVPCVLIASMALLGFTLPPDS----GEKLSLGVT 305
            |::|            .:.:.|:..||...::||..||:::::||...|..:    .||:|||:.
 Worm   234 EVHY------------ILHLNRRPTYYITVIVVPTFLISALSILGIFSPGSNDGPRNEKVSLGLG 286

  Fly   306 ILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNPDTHEM--SEW 368
            .||::||.|::||..|| .|||:||||.|...::.:.|..|..::.:|:.......|.:|  ..:
 Worm   287 SLLAMTVLLDIVAGAMP-KSDAIPLLGYYIMLVILLCAIGVAVSMAMLSMSRSCIQTSKMPPPHY 350

  Fly   369 IRVIFLYWLPCILRMQRPGQVGYECPPPPSS 399
            .|::||.  .|.:..|..|..|......|::
 Worm   351 YRLLFLN--VCRVVKQNSGLNGVAMNEKPTA 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha7NP_001162795.1 LIC 59..548 CDD:273305 93/356 (26%)
Neur_chan_LBD 61..268 CDD:280998 49/217 (23%)
Neur_chan_memb 275..552 CDD:280999 42/131 (32%)
lgc-9NP_500341.1 Neur_chan_LBD 42..245 CDD:280998 49/217 (23%)
Neur_chan_memb 252..>347 CDD:280999 34/95 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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