DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vav and plekhg4

DIOPT Version :10

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001128280.3 Gene:plekhg4 / 779571 XenbaseID:XB-GENE-5998210 Length:1921 Species:Xenopus tropicalis


Alignment Length:796 Identity:159/796 - (19%)
Similarity:284/796 - (35%) Gaps:218/796 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 EFNRKPQMAQFLCSKNIKL--FLDVCHN----------NFGIRDADLFEPTMLYDLTNFHRVLIT 128
            :|.|:.:.:::...|::.|  |.|..:.          :|.:.|..  .|.|            .
 Frog  1080 DFWRRLEESRYQLEKSVTLYQFFDKAYEWALERMRHLASFSLDDCS--SPEM------------C 1130

  Fly   129 LSKLSQCRKVQQLHPDL----------IGFNLQLSPTER------SHSDEAIYKDLHSTDLNMRK 177
            ||.:....:.:..||::          :...|::....:      |...||.:......:..:|.
 Frog  1131 LSAIEGLERYKIQHPEISEEKFMEMKELACELKIEKATKQWKFAWSKCQEARHVLEKKLEAALRA 1195

  Fly   178 TSSIDASASSSAEYYDRTSQSGSLDENSDITIENGTEDIDDYIEDSL---SNMCD---------- 229
            .|.:....||..| .|...|...|:.|.           :.|...|.   |.:|.          
 Frog  1196 KSMLSGEQSSPRE-ADGMEQKELLESNR-----------NKYFFQSKPYNSPLCPRERRLGRVLC 1248

  Fly   230 --STIDNDAEDAGVETPLLSDCQGSHV------RELSF------DLALDVVSSTTDGASNAVTPT 280
              ..|.|..:....:....||. ||.|      |::|.      ||:||::.....|:|.. |.|
 Frog  1249 NRPEIGNTDDHTTRKASPTSDA-GSTVTSVFRTRKMSLQSISGEDLSLDLLHIAPSGSSTP-TVT 1311

  Fly   281 PESYARQSQSPLAAAAPSVPVSAAPGPPMG---RLVSTSSSSSSLLVSESQRLQRAAAAVYNYRS 342
            |..:.|:    |...|.|..:..:.||..|   ||              |:..:|....|:....
 Frog  1312 PRPFTRR----LLRKAQSFDLPGSEGPGYGCQRRL--------------SEPTRRGNTGVFIKGL 1358

  Fly   343 SMASTEHEYAYIYSEDDEKVYEDLCYVTFQAKAKPEVTTDNIACNGTGYDHTNTKEEEVYQDLCA 407
            .::|||             :.:..|        .|..|.|..|             |.:|.:   
 Frog  1359 EVSSTE-------------LVDRPC--------SPRQTRDWSA-------------ECMYSE--- 1386

  Fly   408 LHRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLER-HLNQDELR----LIF 467
             .|.|.|.:...:...:..::|.|::.||..|:..|..:...:...:|| .|.|| ||    :||
 Frog  1387 -RRCSVSSSDGRSRSSKLRHIIDEMVTTEREYVRSLWYISENYFPEMERVDLPQD-LRGKRGIIF 1449

  Fly   468 PRIRELVDIHTKFLDKLRESLTPNAKVKMAQVFLDFREPFLIYGEF------CSLLLGAIDYLAD 526
            ..:.:|.|.|:::..|..||.. |..::::..||..::.|.:|..:      ...|||:   ..:
 Frog  1450 GNLEKLRDFHSQYFLKELESCC-NHPLRVSHCFLRHKDQFGMYALYSKNKPRSDALLGS---HGN 1510

  Fly   527 VCKKNQIIDQLVQKCERDYNVG-KLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERA 590
            :..||           :.:.:| |:.|...|..|:||:.||.|||..|:||.....:...:..||
 Frog  1511 IFFKN-----------KQFLLGDKMDLASYLLKPIQRMSKYALLLKDLIKECEEAQEQELAYLRA 1564

  Fly   591 KEAMIDVSQYINEVKRDSDHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRLLLDGELHIKAHEDQ 655
            .|.|:...      .|..:.|:.:..::|  ||::|.:.         |:|:...|..:..  .:
 Frog  1565 AEEMVKFQ------LRHGNDLLAMDAIRD--CDVNLKEQ---------GQLVRQDEFTVWL--GR 1610

  Fly   656 KTKLRYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTIGRDTRFKYQLLLAR 720
            |...|:.|:|:.:::..|...|:.|...|.|:.|...||..:.::..      |:..::::...|
 Frog  1611 KKCQRHVFLFEDLILFSKPKRIEGGLDVYIYKRSFKTADIGLTENSG------DSGLRFEIWFRR 1669

  Fly   721 KSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCQSTDHK-----------------MEIYTF 768
            :.......|...:...:..|...:.:.:..      |:|.:|                 ::|...
 Frog  1670 RKSSDTHILQASNPETKHAWTSDIAKILWQ------QATRNKEIRMQEMVSMGVGNKPFLDIKPS 1728

  Fly   769 DAPTTCRHCSKFLKGR 784
            ||....|.....:|||
 Frog  1729 DAAINNRAVDYIMKGR 1744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH_VAV 19..135 CDD:409050 12/70 (17%)
RhoGEF 428..602 CDD:459876 50/185 (27%)
PH_Vav 624..753 CDD:269930 20/128 (16%)
C1_VAV 759..810 CDD:410360 9/43 (21%)
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:473055
plekhg4NP_001128280.3 SEC14 726..857 CDD:469559
SPEC 989..1193 CDD:413338 18/126 (14%)
RhoGEF 1406..1568 CDD:459876 49/177 (28%)
PH_puratrophin-1 1570..1705 CDD:270062 27/165 (16%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.