DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and kalrnb

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001314918.1 Gene:kalrnb / 678652 ZFINID:ZDB-GENE-060421-7244 Length:2306 Species:Danio rerio


Alignment Length:675 Identity:139/675 - (20%)
Similarity:254/675 - (37%) Gaps:149/675 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 ERS-HSDEAIYKDLHSTDLNMRKTSSIDASASSSAEYYDRTSQSGSLDENSDITIENGTEDIDDY 219
            ||: |...|:.:.:|:.     ||.:...|.|......|..||..:..:...|:|.:.|.     
Zfish  1573 ERTVHLKGALKEPIHAP-----KTPARQRSISKRETTEDADSQGDASSQPDTISIASRTS----- 1627

  Fly   220 IEDSLSNMCDSTIDNDAEDAGVE-TPLLSDCQGSHVRELSFDLALDV------------------ 265
                     .:|:|:|....|.| |.:|.|.....|.|||......|                  
Zfish  1628 ---------QNTVDSDKLSGGCEQTVVLQDFVAGSVGELSIQSGQTVELLERSGERPGWCLVRTT 1683

  Fly   266 ---------VSSTTDGASNA---------VTPTPESY---ARQSQSPLAA------AAPSVPVSA 303
                     |.|:|...|::         ..|..|:|   :.:.:|..||      :..|:| :.
Zfish  1684 ENSPPQEGLVPSSTLSVSHSRSSVDMDCFFPPGKENYPVGSSEVKSESAASLQPQTSVTSLP-TG 1747

  Fly   304 APGPPMGRLVSTSSSSSSLLVSESQRLQRAAAAVYNY------------RSSMA-------STEH 349
            :|||.  |..:|.::....|.|..:||........|.            |.|:.       |||.
Zfish  1748 SPGPK--RSGTTGNTLKKWLTSPVRRLSHGKGDNANAKKPNNKQRKRDGRKSVELGPHHQDSTEE 1810

  Fly   350 EYAYIYSEDDEKVYEDLCYVTFQAKAKPEVTTDNIACNGTGYDHTNTKEEEVYQDLCALHRTSRS 414
            ......:...|:..||..:.......  |:..|..|      ....|.|...:..|.:  .|...
Zfish  1811 RGRRGTNSGGEEEAEDEPHTPLPPPM--EIIKDPSA------QEDKTPERGSFPVLGS--DTPSD 1865

  Fly   415 QTASSTSFEQRD-------YVIRELIDTESNYLDVLTALKTKFMGPL-ERHLNQD---ELRLIFP 468
            ||......||::       :|:.|::.||.:|:..|......||..: |:.:.:|   :.:::|.
Zfish  1866 QTPRDPETEQKNKALRGRMFVLNEMVQTERDYVKDLGVTVEGFMRRIGEKGVPEDMTGKDKIVFG 1930

  Fly   469 RIRELVDIHTK-FLDKLRESLTPNAKVKMAQVFLDFREPFLIYGEFCSLLLGAIDYLADVCKKNQ 532
            .|.::.|.|.: ||.:|.:.|..:.  |:|::|:.......:|..:|.....:...:|:      
Zfish  1931 NIHQIYDWHKEFFLCELEKCLQDHD--KLAELFIKHERRLHMYVIYCQNKPRSEFVVAE------ 1987

  Fly   533 IIDQLVQKCERDYNVGKLQLRDILSVPMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDV 597
             .|:..:..:::.| .:|.:.|.|..|:|||.||.|||...:|.::....|.:.:|:|.|.|..|
Zfish  1988 -YDKYFEGVQQEIN-SRLAISDYLIKPIQRITKYQLLLKDFLKYSTKAGLDCKEIEKAVELMSLV 2050

  Fly   598 SQYINEVKRDSDHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRLLLDGELHIKAHED---QKTKL 659
            .:..|:                 :.::..||...|. |...|:||......:...:.   .::|.
Zfish  2051 PKQCND-----------------MMNLGRLQGYEGK-LTAQGKLLQQDTFFVTEQDSGVLSRSKE 2097

  Fly   660 RYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTIGRDTRFKYQLLLARKSGK 724
            |..|:|::|:|..:.|...:....|.::.|..::...:|:.     :..|   .|:.:|..:...
Zfish  2098 RRVFLFEQIVIFSELLRKGSSTPGYQFKKSIKVSYLSMEEQ-----VESD---PYKFVLLCRGSS 2154

  Fly   725 TAFTLYLKSEHERDKWRKALTEAME 749
            ...||...:...:.:|.:::.|.::
Zfish  2155 ERLTLQAANVDIKKEWVQSIRELLD 2179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015 45/179 (25%)
PH_Vav 624..753 CDD:269930 24/129 (19%)
PH 641..749 CDD:278594 19/110 (17%)
C1_1 761..804 CDD:278556
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
kalrnbNP_001314918.1 SEC14 46..184 CDD:214706
SPEC 197..413 CDD:238103
SPEC 540..757 CDD:238103
SPEC 882..1120 CDD:238103
SPEC 1126..1214 CDD:197544
RhoGEF 1277..1446 CDD:238091
PH1_Kalirin_Trio_like 1453..1575 CDD:270060 1/1 (100%)
PH 1486..1571 CDD:278594
SH3_Kalirin_1 1641..1700 CDD:212786 12/58 (21%)
SH3-RhoG_link 1697..>1864 CDD:293215 35/179 (20%)
RhoGEF 1886..2056 CDD:279015 45/179 (25%)
PH2_Kalirin_Trio_p63RhoGEF 2060..2193 CDD:270061 24/129 (19%)
PH 2083..2178 CDD:278594 17/102 (17%)
SH3 2246..2302 CDD:302595
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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