DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vav and ARHGEF28

DIOPT Version :9

Sequence 1:NP_001097030.1 Gene:Vav / 32920 FlyBaseID:FBgn0040068 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001073948.2 Gene:ARHGEF28 / 64283 HGNCID:30322 Length:1731 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VavNP_001097030.1 CH 20..132 CDD:278723
RhoGEF 428..603 CDD:279015
PH_Vav 624..753 CDD:269930
PH 641..749 CDD:278594
C1_1 761..804 CDD:278556
SH2_Vav_family 824..934 CDD:198193
SH3 940..993 CDD:302595
ARHGEF28NP_001073948.2 ANK <153..216 CDD:295348
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 287..316
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 473..524
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 630..649
C1 653..698 CDD:237996
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 710..800
RhoGEF 853..1042 CDD:214619
PH_p190RhoGEF 1087..1187 CDD:275430
PH <1123..1188 CDD:278594
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1187..1207
Interaction with PTK2/FAK1, required for regulation of axonal branching and synapse formation. /evidence=ECO:0000250 1295..1304
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1312..1339
Mediates cytoplasmic retention and interaction with YWHAH. /evidence=ECO:0000250 1372..1383
RNA-binding. /evidence=ECO:0000250 1496..1527
Mediates cytoplasmic retention and interaction with MAPK8IP1. /evidence=ECO:0000250 1566..1579
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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